From 1ff86791fb17a8a35550e3842291d9d64be4dd36 Mon Sep 17 00:00:00 2001
From: dpastoor <devin.pastoor@gmail.com>
Date: Thu, 14 Nov 2024 19:50:13 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20A2-ai/gh?=
 =?UTF-8?q?qc.app@fdee9261276fa9dc6222ef8de008102561ff93b4=20=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 404.html                          | 2 +-
 LICENSE-text.html                 | 2 +-
 LICENSE.html                      | 2 +-
 authors.html                      | 6 +++---
 index.html                        | 2 +-
 news/index.html                   | 9 ++++++++-
 pkgdown.yml                       | 2 +-
 reference/ghqc_assign_app.html    | 2 +-
 reference/ghqc_record_app.html    | 2 +-
 reference/ghqc_resolve_app.html   | 2 +-
 reference/ghqc_set_info_repo.html | 2 +-
 reference/index.html              | 2 +-
 search.json                       | 2 +-
 13 files changed, 22 insertions(+), 15 deletions(-)

diff --git a/404.html b/404.html
index bf6ad68..83e9c94 100644
--- a/404.html
+++ b/404.html
@@ -21,7 +21,7 @@
 
     <a class="navbar-brand me-2" href="https://a2-ai.github.io/ghqc.app/index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/LICENSE-text.html b/LICENSE-text.html
index 182100f..416db0a 100644
--- a/LICENSE-text.html
+++ b/LICENSE-text.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/LICENSE.html b/LICENSE.html
index 33c25c5..156811d 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/authors.html b/authors.html
index a4f5024..96e6b1c 100644
--- a/authors.html
+++ b/authors.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -60,13 +60,13 @@ <h2 id="citation">Citation</h2>
 
       <p>Johnson J, Zheng A, Pastoor D, Cummings W (2024).
 <em>ghqc.app: Create QC Checklists in Github Issues</em>.
-R package version 0.1.11, <a href="https://a2-ai.github.io/ghqc.app/">https://a2-ai.github.io/ghqc.app/</a>.
+R package version 0.2.0, <a href="https://a2-ai.github.io/ghqc.app/">https://a2-ai.github.io/ghqc.app/</a>.
 </p>
       <pre>@Manual{,
   title = {ghqc.app: Create QC Checklists in Github Issues},
   author = {Jenna Johnson and Anne Zheng and Devin Pastoor and Wes Cummings},
   year = {2024},
-  note = {R package version 0.1.11},
+  note = {R package version 0.2.0},
   url = {https://a2-ai.github.io/ghqc.app/},
 }</pre>
     </div>
diff --git a/index.html b/index.html
index 7e69188..d24ffbb 100644
--- a/index.html
+++ b/index.html
@@ -23,7 +23,7 @@
 
     <a class="navbar-brand me-2" href="index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/news/index.html b/news/index.html
index 268e42d..ac94698 100644
--- a/news/index.html
+++ b/news/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -30,6 +30,13 @@
 
     </div>
 
+    <div class="section level2">
+<h2 class="pkg-version" data-toc-text="0.2.0" id="ghqcapp-020">ghqc.app 0.2.0<a class="anchor" aria-label="anchor" href="#ghqcapp-020"></a></h2>
+<p>Inclusive of 0.1.9, 0.1.10, 0.1.11 changes:</p>
+<ul><li>Adding the branch and a link to the file contents at the start of QC to the Metadata section of Issues created by the Assign app. Also added links to the file contents at the previous and current commits in the metadata section of the resolve app comments.</li>
+<li>Adds “ghqc” label to all GitHub Issues created by ghqc. Only Issues with this label, and the Milestones containing them, will be viewable/selectable in the apps. This change is NOT backward compatible with Issues/Milestones created in previous versions</li>
+<li>Clarifies language in Warning and Error modals for all three apps</li>
+</ul></div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="0.1.11" id="ghqcapp-0111">ghqc.app 0.1.11<a class="anchor" aria-label="anchor" href="#ghqcapp-0111"></a></h2>
 <ul><li>Adding the branch and a link to the file contents at the start of QC to the Metadata section of Issues created by the Assign app. Also added links to the file contents at the previous and current commits in the metadata section of the resolve app comments.</li>
diff --git a/pkgdown.yml b/pkgdown.yml
index 93d6248..479152e 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,7 +2,7 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-11-13T20:35Z
+last_built: 2024-11-14T19:50Z
 urls:
   reference: https://a2-ai.github.io/ghqc.app/reference
   article: https://a2-ai.github.io/ghqc.app/articles
diff --git a/reference/ghqc_assign_app.html b/reference/ghqc_assign_app.html
index a806b36..46a3189 100644
--- a/reference/ghqc_assign_app.html
+++ b/reference/ghqc_assign_app.html
@@ -11,7 +11,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ghqc_record_app.html b/reference/ghqc_record_app.html
index 4ddde91..ae771b4 100644
--- a/reference/ghqc_record_app.html
+++ b/reference/ghqc_record_app.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ghqc_resolve_app.html b/reference/ghqc_resolve_app.html
index 1ee63aa..e7b9bf3 100644
--- a/reference/ghqc_resolve_app.html
+++ b/reference/ghqc_resolve_app.html
@@ -15,7 +15,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ghqc_set_info_repo.html b/reference/ghqc_set_info_repo.html
index b17d1a7..a76ce1c 100644
--- a/reference/ghqc_set_info_repo.html
+++ b/reference/ghqc_set_info_repo.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index.html b/reference/index.html
index be3c9c9..0d85db5 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">ghqc.app</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.1.11</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.0</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/search.json b/search.json
index bec5acf..bd490fa 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. protect rights, need prevent others denying rights asking surrender rights. Therefore, certain responsibilities distribute copies software, modify : responsibilities respect freedom others. example, distribute copies program, whether gratis fee, must pass recipients freedoms received. must make sure , , receive can get source code. must show terms know rights. 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Patents","title":"GNU General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom","title":"GNU General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_13-use-with-the-gnu-affero-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Use with the GNU Affero General Public License","title":"GNU General Public License","text":"Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU Affero General Public License single combined work, convey resulting work. terms License continue apply part covered work, special requirements GNU Affero General Public License, section 13, concerning interaction network apply combination .","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License","title":"GNU General Public License","text":"Free Software Foundation may publish revised /new versions GNU General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty","title":"GNU General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability","title":"GNU General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see <http://www.gnu.org/licenses/>. GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read <http://www.gnu.org/philosophy/--lgpl.html>.","code":"<one line to give the program's name and a brief idea of what it does.> Copyright (C) <year>  <name of author>  This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.  This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://a2-ai.github.io/ghqc.app/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Jenna Johnson. Author, maintainer. Anne Zheng. Author. Janelle Lennie. Contributor. Devin Pastoor. Author. Wes Cummings. Author.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Johnson J, Zheng , Pastoor D, Cummings W (2024). ghqc.app: Create QC Checklists Github Issues. R package version 0.1.11, https://a2-ai.github.io/ghqc.app/.","code":"@Manual{,   title = {ghqc.app: Create QC Checklists in Github Issues},   author = {Jenna Johnson and Anne Zheng and Devin Pastoor and Wes Cummings},   year = {2024},   note = {R package version 0.1.11},   url = {https://a2-ai.github.io/ghqc.app/}, }"},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"ghqcapp-","dir":"","previous_headings":"","what":"Create QC Checklists in Github Issues","title":"Create QC Checklists in Github Issues","text":"goal ghqc ecosystem simplify, standardize, improve traceability QC process use shiny apps create GitHub Issues Milestones project. ghqc.app intended used ghqc package, aid setup launching shiny apps. ghqc.app package 3 main applications/functions: ghqc_assign_app: app helps author assign set files, corresponding checklist QCer, GitHub Milestone kick-QC review. ghqc_resolve_app: Throughout QC review, app helps author communicate resolution QC findings comparison file differences, hashes, commits. ghqc_record_app: app generates record compiles QC review occurred GitHub.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Create QC Checklists in Github Issues","text":"can install development version ghqc.app GitHub :","code":"# install.packages(\"pak\") pak::pak(\"a2-ai/ghqc.app\")"},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"interacting-with-ghqc","dir":"","previous_headings":"","what":"Interacting with ghqc","title":"Create QC Checklists in Github Issues","text":"","code":"library(ghqc.app)"},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"assign-files-for-qc","dir":"","previous_headings":"","what":"Assign file(s) for QC","title":"Create QC Checklists in Github Issues","text":"ghqc_assign_app provides interface assign one files QC form GitHub Issue(s) within GitHub Milestone, options assign repository collaborator QCer /generate checklist suggested review tasks QC. Issue created corresponds single file assigned reviewed QC. Issues organized Milestones designated user.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"to-assign-qc","dir":"","previous_headings":"Assign file(s) for QC","what":"To Assign QC","title":"Create QC Checklists in Github Issues","text":"Input name create new Milestone select existing Milestone. Optional: creating new Milestone, input description. Optional: select one collaborators assigned perform QC. selected collaborator(s) assignee(s) explicitly assigned one selected files (Step 5 ). Select one files file tree. Click + signs expand directories file tree. Optional: select assignee selected file. Select checklist type selected file. Post Milestone clicking “Assign File(s) QC” bottom pane. time, user can: Click Preview file contents button selected file view contents. Click Preview checklist button selected file view items selected checklist.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"resolve-qc-findings","dir":"","previous_headings":"","what":"Resolve QC finding(s)","title":"Create QC Checklists in Github Issues","text":"ghqc_resolve_app allows user insert comment ghqc GitHub Issue displays changes version control information Issue’s corresponding file. default, comment displays original current commits hashes file. versions selected user. comment can optionally display file difference (“diff”) current previous versions. changes likely implementations QC feedback. use app, first initialize one Issues ghqc_assign_app().","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"to-comment-in-an-issue","dir":"","previous_headings":"Resolve QC finding(s)","what":"To comment in an Issue","title":"Create QC Checklists in Github Issues","text":"Optional: filter set Issues within Milestone. Select Issue updated. Optional: provide contextualizing message changes made file (e.g. “Implemented QC feedback line 20”). Optional: insert file difference display comment, selecting “Show file difference”. displaying file difference, choose either: compare original version current version , compare previous version current version. Optional: preview comment posting Issue. Post comment Issue.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"generate-qc-record","dir":"","previous_headings":"","what":"Generate QC Record","title":"Create QC Checklists in Github Issues","text":"ghqc_record_app allows user generate QC Record one Milestones created ghqc_assign_app.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"to-generate-a-qc-record","dir":"","previous_headings":"Generate QC Record","what":"To Generate a QC Record","title":"Create QC Checklists in Github Issues","text":"Select one Milestones. optional include open closed Milestones unchecking “Closed Milestones ”. Optional: input name PDF. default name hyphenated combination GitHub repository name selected Milestone name(s). Optional: input directory generate PDF. default directory root R project. Optional: indicate report include Milestone Issue summary tables checking “Just tables”. Else, default setting generate Record contains summary tables front well detailed descriptions Issue including version control information, users, datetimes, events, actions, comments . Create PDF clicking “Generate QC Record” bottom pane.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_assign_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Assign file(s) for QC — ghqc_assign_app","title":"Assign file(s) for QC — ghqc_assign_app","text":"function provides interface assign one files QC form GitHub Issue(s) within GitHub Milestone, options assign repository collaborator QCer /generate checklist suggested review tasks QC.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_assign_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Assign file(s) for QC — ghqc_assign_app","text":"","code":"ghqc_assign_app()"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_assign_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Assign file(s) for QC — ghqc_assign_app","text":"Starts Shiny app return value.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_record_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Generate a QC Record for one or more Milestones — ghqc_record_app","title":"Generate a QC Record for one or more Milestones — ghqc_record_app","text":"function allows user generate QC Record one Milestones created assign app.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_record_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Generate a QC Record for one or more Milestones — ghqc_record_app","text":"","code":"ghqc_record_app()"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_record_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Generate a QC Record for one or more Milestones — ghqc_record_app","text":"Starts Shiny app return value.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_resolve_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","title":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","text":"function allows user insert comment ghqc GitHub Issue displays changes version control information Issue’s corresponding file. default, comment displays original current commits hashes file. versions selected user. comment can optionally display file difference (“diff”) current previous versions. changes likely implementations QC feedback.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_resolve_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","text":"","code":"ghqc_resolve_app()"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_resolve_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","text":"Starts Shiny app return value.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_set_info_repo.html","id":null,"dir":"Reference","previous_headings":"","what":"set the repo that stores the ghqc info — ghqc_set_info_repo","title":"set the repo that stores the ghqc info — ghqc_set_info_repo","text":"set repo stores ghqc info","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_set_info_repo.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"set the repo that stores the ghqc info — ghqc_set_info_repo","text":"","code":"ghqc_set_info_repo(   repo_path = file.path(\"~/.local/share/ghqc\", info_repo_name()) )"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_set_info_repo.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"set the repo that stores the ghqc info — ghqc_set_info_repo","text":"repo_path path git repo storing ghqc information","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-0111","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.11","title":"ghqc.app 0.1.11","text":"Adding branch link file contents start QC Metadata section Issues created Assign app. Also added links file contents previous current commits metadata section resolve app comments.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-0110","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.10","title":"ghqc.app 0.1.10","text":"Adds “ghqc” label GitHub Issues created ghqc. Issues label, Milestones containing , viewable/selectable apps. change backward compatible Issues/Milestones created previous versions","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-019","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.9","title":"ghqc.app 0.1.9","text":"Clarifies language Warning Error modals three apps","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-018","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.8","title":"ghqc.app 0.1.8","text":"Removes reset button record app modal users click closing milestones closed milestones exist (buggy viewer panel)","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-017","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.7","title":"ghqc.app 0.1.7","text":"Fixes bug rendered reports maximum height logos wasn’t set prevent overlapping header lines header text.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-016","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.6","title":"ghqc.app 0.1.6","text":"Fixes bug record app previewing markdown files (bug solution 0.1.4)","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-015","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.5","title":"ghqc.app 0.1.5","text":"Fixes bug assign resolve apps - error checking catch remote changes directory checks git fetch first","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-014","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.4","title":"ghqc.app 0.1.4","text":"Fixes bug resolve app previewing markdown files","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-013","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.3","title":"ghqc.app 0.1.3","text":"Changes “Existing Milestones”” “Open Milestones” ghqc_assign_app() Existing Milestones dropdown menu","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-012","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.2","title":"ghqc.app 0.1.2","text":"Fixes bug record app warning modal pop-unclosed milestones/issues/checklist items: Milestone link wasn’t clickable Improves “closed milestones” modal pop-warning record app. Language change “recommended close milestones” adds reset link modal users click closing milestones.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-011","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.1","title":"ghqc.app 0.1.1","text":"case someone sets standard gh environment variable GITHUB_API_URL, app checks URL matches actual set remote URL. function gets GITHUB_API_URL explicitly return value. Small grammar fix error message apps case checklists directory isn’t cloned info repo.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-0009011","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.0.0.9011","title":"ghqc.app 0.0.0.9011","text":"rename ghqc ghqc.app ghqc.launcher ghqc","code":""}]
+[{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. protect rights, need prevent others denying rights asking surrender rights. Therefore, certain responsibilities distribute copies software, modify : responsibilities respect freedom others. example, distribute copies program, whether gratis fee, must pass recipients freedoms received. must make sure , , receive can get source code. must show terms know rights. Developers use GNU GPL protect rights two steps: (1) assert copyright software, (2) offer License giving legal permission copy, distribute /modify . developers’ authors’ protection, GPL clearly explains warranty free software. users’ authors’ sake, GPL requires modified versions marked changed, problems attributed erroneously authors previous versions. devices designed deny users access install run modified versions software inside , although manufacturer can . fundamentally incompatible aim protecting users’ freedom change software. systematic pattern abuse occurs area products individuals use, precisely unacceptable. Therefore, designed version GPL prohibit practice products. problems arise substantially domains, stand ready extend provision domains future versions GPL, needed protect freedom users. Finally, every program threatened constantly software patents. States allow patents restrict development use software general-purpose computers, , wish avoid special danger patents applied free program make effectively proprietary. prevent , GPL assures patents used render program non-free. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions","title":"GNU General Public License","text":"“License” refers version 3 GNU General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. Mere interaction user computer network, transfer copy, conveying. interactive user interface displays “Appropriate Legal Notices” extent includes convenient prominently visible feature (1) displays appropriate copyright notice, (2) tells user warranty work (except extent warranties provided), licensees may convey work License, view copy License. interface presents list user commands options, menu, prominent item list meets criterion.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_1-source-code","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"1. Source Code","title":"GNU General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. However, include work’s System Libraries, general-purpose tools generally available free programs used unmodified performing activities part work. example, Corresponding Source includes interface definition files associated source files work, source code shared libraries dynamically linked subprograms work specifically designed require, intimate data communication control flow subprograms parts work. Corresponding Source need include anything users can regenerate automatically parts Corresponding Source. Corresponding Source work source code form work.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_2-basic-permissions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"2. Basic Permissions","title":"GNU General Public License","text":"rights granted License granted term copyright Program, irrevocable provided stated conditions met. License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law","title":"GNU General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies","title":"GNU General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions","title":"GNU General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: ) work must carry prominent notices stating modified , giving relevant date. b) work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. c) must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. License gives permission license work way, invalidate permission separately received . d) work interactive user interfaces, must display Appropriate Legal Notices; however, Program interactive interfaces display Appropriate Legal Notices, work need make . compilation covered work separate independent works, nature extensions covered work, combined form larger program, volume storage distribution medium, called “aggregate” compilation resulting copyright used limit access legal rights compilation’s users beyond individual works permit. Inclusion covered work aggregate cause License apply parts aggregate.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_6-conveying-non-source-forms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"6. Conveying Non-Source Forms","title":"GNU General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: ) Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. b) Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. c) Convey individual copies object code copy written offer provide Corresponding Source. alternative allowed occasionally noncommercially, received object code offer, accord subsection 6b. d) Convey object code offering access designated place (gratis charge), offer equivalent access Corresponding Source way place charge. need require recipients copy Corresponding Source along object code. place copy object code network server, Corresponding Source may different server (operated third party) supports equivalent copying facilities, provided maintain clear directions next object code saying find Corresponding Source. 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Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms","title":"GNU General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. Additional permissions applicable entire Program shall treated though included License, extent valid applicable law. additional permissions apply part Program, part may used separately permissions, entire Program remains governed License without regard additional permissions. convey copy covered work, may option remove additional permissions copy, part . (Additional permissions may written require removal certain cases modify work.) may place additional permissions material, added covered work, can give appropriate copyright permission. 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Termination","title":"GNU General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies","title":"GNU General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients","title":"GNU General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents","title":"GNU General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom","title":"GNU General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_13-use-with-the-gnu-affero-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Use with the GNU Affero General Public License","title":"GNU General Public License","text":"Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU Affero General Public License single combined work, convey resulting work. terms License continue apply part covered work, special requirements GNU Affero General Public License, section 13, concerning interaction network apply combination .","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License","title":"GNU General Public License","text":"Free Software Foundation may publish revised /new versions GNU General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty","title":"GNU General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability","title":"GNU General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://a2-ai.github.io/ghqc.app/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see <http://www.gnu.org/licenses/>. GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read <http://www.gnu.org/philosophy/--lgpl.html>.","code":"<one line to give the program's name and a brief idea of what it does.> Copyright (C) <year>  <name of author>  This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.  This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://a2-ai.github.io/ghqc.app/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Jenna Johnson. Author, maintainer. Anne Zheng. Author. Janelle Lennie. Contributor. Devin Pastoor. Author. Wes Cummings. Author.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Johnson J, Zheng , Pastoor D, Cummings W (2024). ghqc.app: Create QC Checklists Github Issues. R package version 0.2.0, https://a2-ai.github.io/ghqc.app/.","code":"@Manual{,   title = {ghqc.app: Create QC Checklists in Github Issues},   author = {Jenna Johnson and Anne Zheng and Devin Pastoor and Wes Cummings},   year = {2024},   note = {R package version 0.2.0},   url = {https://a2-ai.github.io/ghqc.app/}, }"},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"ghqcapp-","dir":"","previous_headings":"","what":"Create QC Checklists in Github Issues","title":"Create QC Checklists in Github Issues","text":"goal ghqc ecosystem simplify, standardize, improve traceability QC process use shiny apps create GitHub Issues Milestones project. ghqc.app intended used ghqc package, aid setup launching shiny apps. ghqc.app package 3 main applications/functions: ghqc_assign_app: app helps author assign set files, corresponding checklist QCer, GitHub Milestone kick-QC review. ghqc_resolve_app: Throughout QC review, app helps author communicate resolution QC findings comparison file differences, hashes, commits. ghqc_record_app: app generates record compiles QC review occurred GitHub.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Create QC Checklists in Github Issues","text":"can install development version ghqc.app GitHub :","code":"# install.packages(\"pak\") pak::pak(\"a2-ai/ghqc.app\")"},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"interacting-with-ghqc","dir":"","previous_headings":"","what":"Interacting with ghqc","title":"Create QC Checklists in Github Issues","text":"","code":"library(ghqc.app)"},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"assign-files-for-qc","dir":"","previous_headings":"","what":"Assign file(s) for QC","title":"Create QC Checklists in Github Issues","text":"ghqc_assign_app provides interface assign one files QC form GitHub Issue(s) within GitHub Milestone, options assign repository collaborator QCer /generate checklist suggested review tasks QC. Issue created corresponds single file assigned reviewed QC. Issues organized Milestones designated user.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"to-assign-qc","dir":"","previous_headings":"Assign file(s) for QC","what":"To Assign QC","title":"Create QC Checklists in Github Issues","text":"Input name create new Milestone select existing Milestone. Optional: creating new Milestone, input description. Optional: select one collaborators assigned perform QC. selected collaborator(s) assignee(s) explicitly assigned one selected files (Step 5 ). Select one files file tree. Click + signs expand directories file tree. Optional: select assignee selected file. Select checklist type selected file. Post Milestone clicking “Assign File(s) QC” bottom pane. time, user can: Click Preview file contents button selected file view contents. Click Preview checklist button selected file view items selected checklist.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"resolve-qc-findings","dir":"","previous_headings":"","what":"Resolve QC finding(s)","title":"Create QC Checklists in Github Issues","text":"ghqc_resolve_app allows user insert comment ghqc GitHub Issue displays changes version control information Issue’s corresponding file. default, comment displays original current commits hashes file. versions selected user. comment can optionally display file difference (“diff”) current previous versions. changes likely implementations QC feedback. use app, first initialize one Issues ghqc_assign_app().","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"to-comment-in-an-issue","dir":"","previous_headings":"Resolve QC finding(s)","what":"To comment in an Issue","title":"Create QC Checklists in Github Issues","text":"Optional: filter set Issues within Milestone. Select Issue updated. Optional: provide contextualizing message changes made file (e.g. “Implemented QC feedback line 20”). Optional: insert file difference display comment, selecting “Show file difference”. displaying file difference, choose either: compare original version current version , compare previous version current version. Optional: preview comment posting Issue. Post comment Issue.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"generate-qc-record","dir":"","previous_headings":"","what":"Generate QC Record","title":"Create QC Checklists in Github Issues","text":"ghqc_record_app allows user generate QC Record one Milestones created ghqc_assign_app.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/index.html","id":"to-generate-a-qc-record","dir":"","previous_headings":"Generate QC Record","what":"To Generate a QC Record","title":"Create QC Checklists in Github Issues","text":"Select one Milestones. optional include open closed Milestones unchecking “Closed Milestones ”. Optional: input name PDF. default name hyphenated combination GitHub repository name selected Milestone name(s). Optional: input directory generate PDF. default directory root R project. Optional: indicate report include Milestone Issue summary tables checking “Just tables”. Else, default setting generate Record contains summary tables front well detailed descriptions Issue including version control information, users, datetimes, events, actions, comments . Create PDF clicking “Generate QC Record” bottom pane.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_assign_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Assign file(s) for QC — ghqc_assign_app","title":"Assign file(s) for QC — ghqc_assign_app","text":"function provides interface assign one files QC form GitHub Issue(s) within GitHub Milestone, options assign repository collaborator QCer /generate checklist suggested review tasks QC.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_assign_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Assign file(s) for QC — ghqc_assign_app","text":"","code":"ghqc_assign_app()"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_assign_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Assign file(s) for QC — ghqc_assign_app","text":"Starts Shiny app return value.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_record_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Generate a QC Record for one or more Milestones — ghqc_record_app","title":"Generate a QC Record for one or more Milestones — ghqc_record_app","text":"function allows user generate QC Record one Milestones created assign app.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_record_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Generate a QC Record for one or more Milestones — ghqc_record_app","text":"","code":"ghqc_record_app()"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_record_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Generate a QC Record for one or more Milestones — ghqc_record_app","text":"Starts Shiny app return value.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_resolve_app.html","id":null,"dir":"Reference","previous_headings":"","what":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","title":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","text":"function allows user insert comment ghqc GitHub Issue displays changes version control information Issue’s corresponding file. default, comment displays original current commits hashes file. versions selected user. comment can optionally display file difference (“diff”) current previous versions. changes likely implementations QC feedback.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_resolve_app.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","text":"","code":"ghqc_resolve_app()"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_resolve_app.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Comment in an Issue to display file changes during QC — ghqc_resolve_app","text":"Starts Shiny app return value.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_set_info_repo.html","id":null,"dir":"Reference","previous_headings":"","what":"set the repo that stores the ghqc info — ghqc_set_info_repo","title":"set the repo that stores the ghqc info — ghqc_set_info_repo","text":"set repo stores ghqc info","code":""},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_set_info_repo.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"set the repo that stores the ghqc info — ghqc_set_info_repo","text":"","code":"ghqc_set_info_repo(   repo_path = file.path(\"~/.local/share/ghqc\", info_repo_name()) )"},{"path":"https://a2-ai.github.io/ghqc.app/reference/ghqc_set_info_repo.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"set the repo that stores the ghqc info — ghqc_set_info_repo","text":"repo_path path git repo storing ghqc information","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-020","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.2.0","title":"ghqc.app 0.2.0","text":"Inclusive 0.1.9, 0.1.10, 0.1.11 changes: Adding branch link file contents start QC Metadata section Issues created Assign app. Also added links file contents previous current commits metadata section resolve app comments. Adds “ghqc” label GitHub Issues created ghqc. Issues label, Milestones containing , viewable/selectable apps. change backward compatible Issues/Milestones created previous versions Clarifies language Warning Error modals three apps","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-0111","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.11","title":"ghqc.app 0.1.11","text":"Adding branch link file contents start QC Metadata section Issues created Assign app. Also added links file contents previous current commits metadata section resolve app comments.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-0110","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.10","title":"ghqc.app 0.1.10","text":"Adds “ghqc” label GitHub Issues created ghqc. Issues label, Milestones containing , viewable/selectable apps. change backward compatible Issues/Milestones created previous versions","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-019","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.9","title":"ghqc.app 0.1.9","text":"Clarifies language Warning Error modals three apps","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-018","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.8","title":"ghqc.app 0.1.8","text":"Removes reset button record app modal users click closing milestones closed milestones exist (buggy viewer panel)","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-017","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.7","title":"ghqc.app 0.1.7","text":"Fixes bug rendered reports maximum height logos wasn’t set prevent overlapping header lines header text.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-016","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.6","title":"ghqc.app 0.1.6","text":"Fixes bug record app previewing markdown files (bug solution 0.1.4)","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-015","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.5","title":"ghqc.app 0.1.5","text":"Fixes bug assign resolve apps - error checking catch remote changes directory checks git fetch first","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-014","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.4","title":"ghqc.app 0.1.4","text":"Fixes bug resolve app previewing markdown files","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-013","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.3","title":"ghqc.app 0.1.3","text":"Changes “Existing Milestones”” “Open Milestones” ghqc_assign_app() Existing Milestones dropdown menu","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-012","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.2","title":"ghqc.app 0.1.2","text":"Fixes bug record app warning modal pop-unclosed milestones/issues/checklist items: Milestone link wasn’t clickable Improves “closed milestones” modal pop-warning record app. Language change “recommended close milestones” adds reset link modal users click closing milestones.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-011","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.1.1","title":"ghqc.app 0.1.1","text":"case someone sets standard gh environment variable GITHUB_API_URL, app checks URL matches actual set remote URL. function gets GITHUB_API_URL explicitly return value. Small grammar fix error message apps case checklists directory isn’t cloned info repo.","code":""},{"path":"https://a2-ai.github.io/ghqc.app/news/index.html","id":"ghqcapp-0009011","dir":"Changelog","previous_headings":"","what":"ghqc.app 0.0.0.9011","title":"ghqc.app 0.0.0.9011","text":"rename ghqc ghqc.app ghqc.launcher ghqc","code":""}]