RunChecks.yaml

# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  push:
    branches: [main, master, workflow_test]
  pull_request:
    branches: [main, master, workflow_test]

name: R-CMD-check

jobs:
  R-CMD-check:
    runs-on: ubuntu-latest

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: ubuntu-latest,   r: '4.3'}
          - {os: ubuntu-latest,   r: '4.2'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v4

      - uses: r-lib/actions/setup-pandoc@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          use-public-rspm: true

      - name: Download mocked binaries
        run: |
          mkdir -p /usr/local/bin
          cd /tmp
          gh release download "sinfo/v0.2.1" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/
          tar -xvf /usr/local/bin/sinfo_Linux_x86_64.tar.gz
          mv ./sinfo /usr/local/bin/sinfo
          chmod 755 /usr/local/bin/sinfo

          gh release download "sacct/v0.2.0" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/
          tar -xvf /usr/local/bin/sacct_Linux_x86_64.tar.gz
          mv ./sacct /usr/local/bin/sacct
          chmod 755 /usr/local/bin/sacct

          gh release download "squeue/v0.2.0" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/
          tar -xvf /usr/local/bin/squeue_Linux_x86_64.tar.gz
          mv ./squeue /usr/local/bin/squeue
          chmod 755 /usr/local/bin/squeue

          gh release download "sbatch/v0.2.0" -R a2-ai-tech-training/slurm-mocks -p "*Linux_x86_64.tar.gz" -D /usr/local/bin/
          tar -xvf /usr/local/bin/sbatch_Linux_x86_64.tar.gz
          mv ./sbatch /usr/local/bin/sbatch
          chmod 755 /usr/local/bin/sbatch

          echo "/usr/local/bin" >> $GITHUB_PATH
        env:
          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

      - name: Check mocked binaries work in different step
        run: |
          Rscript -e 'if (!requireNamespace("processx", quietly = TRUE)) install.packages("processx"); processx::run("sinfo", args = c("--format", "%P,%c,%m"),)'
          Rscript -e 'processx::run("sacct", args = "--json")'
          Rscript -e 'processx::run("squeue", args = "--version")'
          Rscript -e 'processx::run("squeue", args = "--json")'
          Rscript -e 'processx::run("sbatch", args = "path_to_file")'

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: |
            metrumresearchgroup/mrgmisc
            metrumresearchgroup/nmrec
            metrumresearchgroup/bbr
            any::rcmdcheck
          needs: check

      - uses: r-lib/actions/check-r-package@v2
        with:
          upload-snapshots: true