From 7781c867fd777f34ddf6212f8d315a5d34b9e18d Mon Sep 17 00:00:00 2001
From: SylviaWhittle <sylviwhittle@gmail.com>
Date: Wed, 4 Dec 2024 10:59:33 +0000
Subject: [PATCH] Add: class index to disordered tracing config

---
 topostats/default_config.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/topostats/default_config.yaml b/topostats/default_config.yaml
index ad7b1e7360..73cacbf349 100644
--- a/topostats/default_config.yaml
+++ b/topostats/default_config.yaml
@@ -65,6 +65,7 @@ grainstats:
   extract_height_profile: true # Extract height profiles along maximum feret of molecules
 disordered_tracing:
   run: true # Options : true, false
+  class_index: 1 # The class index to trace. This is the class index of the grains.
   min_skeleton_size: 10 # Minimum number of pixels in a skeleton for it to be retained.
   pad_width: 1 # Pixels to pad grains by when tracing
   mask_smoothing_params: