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Smarter rendering of small objects #33

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andreped opened this issue Jun 8, 2022 · 1 comment
Closed

Smarter rendering of small objects #33

andreped opened this issue Jun 8, 2022 · 1 comment
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enhancement New feature or request

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@andreped
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andreped commented Jun 8, 2022

Similar to #32, if you zoom out, small objects become invisible. In that scenario it makes sense to merge all together, or similar, if they are close, when rendering are low resolution.

However, for mitoses, which commonly are quite rare in a WSI, you will not have the same effect. Perhaps it could be a good idea to support drawing disks (or similar) of different sizes, such that when you zoom out, you can visualize where the mitoses are located in a WSI.

That would be a great solution for visualizing how the mitoses are distributed in a WSI, and it enables the user to very easily find the hotspot, relevant for measuring the mitosis activity.

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andreped commented Dec 6, 2022

This is now possible in the latest release:
https://github.com/AICAN-Research/FAST-Pathology/releases/tag/v1.1.0

Simply set a border-radius to a large value in the fast text pipeline for the given model, like so:

Renderer segRenderer SegmentationRenderer
Attribute border-radius 20
Input 0 stitcher 0

For more information on how to customize or make custom pipelines, see (here)[https://github.com/AICAN-Research/FAST-Pathology/wiki/Adding-custom-models#what-are-pipelines].

@andreped andreped closed this as completed Dec 6, 2022
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