README.md

scripts_bianca

Scripts to be run on Bianca.

Summary

Create a zip:

./scripts_bianca/00_create_starter_zip.sh

On Bianca:

./scripts_bianca/02_run.sh

No need to use sbatch here, the script will sbatch all jobs.

Detailed workflow

0. Zip

This is local, in the nsphs_ml_qt folder:

./scripts_bianca/00_create_starter_zip.sh

Creates a file called nsphs_ml_qt_starter_zip.zip

1. Unzip

First time:

unzip richel-sens2021565/nsphs_ml_qt_starter_zip.zip

This will create a file called 01_unzip_starter_zip.sh in the home folder, so after that, one can do:

./01_unzip_starter_zip.sh

10. Create dataset 1

See #4:

sbatch nsphs_ml_qt/scripts_bianca/10_create_dataset_1.sh

11. Train on dataset 1

sbatch nsphs_ml_qt/scripts_bianca/11_train_on_dataset_1.sh

12. Project on dataset 1

sbatch nsphs_ml_qt/scripts_bianca/12_project_on_dataset_1.sh

13. Plot on dataset 1

sbatch nsphs_ml_qt/scripts_bianca/13_plot_on_dataset_1.sh

14. Animate on dataset 1

sbatch nsphs_ml_qt/scripts_bianca/14_animate_on_dataset_1.sh

15. Evaluate on dataset 1

sbatch nsphs_ml_qt/scripts_bianca/15_evaluate_on_dataset_1.sh

20. Create dataset 2

See #5

sbatch nsphs_ml_qt/scripts_bianca/20_create_dataset_2.sh

21. Train on dataset 2

sbatch nsphs_ml_qt/scripts_bianca/21_train_on_dataset_2.sh

22. [other steps on dataset 2]

98. Clean Bianca

./98_clean_bianca.sh