DESCRIPTION

Package: ballgown
Maintainer: Alyssa Frazee <alyssa.frazee@gmail.com>
Author: Alyssa Frazee, Andrew Jaffe, Leonardo Collado Torres, Jeff Leek
Version: 0.99.2
License: Artistic-2.0
Title: Flexible, isoform-level differential expression analysis
Description: Tools for statistical analysis of assembled transcriptomes,
    including flexible differential expression analysis, visualization of
    transcript structures, and matching of assembled transcripts to annotation.
Depends:
    R (>= 3.0.0),
    methods
Imports:
    GenomicRanges (>= 1.17.25),
    IRanges (>= 1.99.22),
    S4Vectors (>= 0.1.2),
    RColorBrewer,
    splines,
    sva,
    limma,
    rtracklayer (>= 1.25.13),
    Biobase (>= 2.25.0)
Suggests:
    testthat,
    knitr,
    knitcitations
VignetteBuilder: knitr
biocViews: RNASeq, StatisticalMethod, Preprocessing, DifferentialExpression