Add more debug output to MacOS CI test #259
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# This workflow will install Python dependencies, run tests and lint with a single version of Python | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Ubuntu tests | |
on: | |
push: | |
branches: [ "pygmtsar2" ] | |
pull_request: | |
branches: [ "pygmtsar2" ] | |
permissions: | |
contents: read | |
jobs: | |
Imperial_Valley_2015: | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest"] | |
python-version: ["3.10", "3.11"] | |
runs-on: ${{ matrix.os }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install system dependencies | |
run: | | |
uname -a | |
# prepare system | |
sudo apt update | |
# https://github.com/gmtsar/gmtsar/wiki/GMTSAR-Wiki-Page | |
sudo apt install -y csh subversion autoconf libtiff5-dev libhdf5-dev wget | |
sudo apt install -y liblapack-dev | |
sudo apt install -y gfortran | |
sudo apt install -y g++ | |
sudo apt install -y libgmt-dev | |
sudo apt install -y gmt-dcw gmt-gshhg | |
# gmt-gshhg-full should be installed automatically (it is required to use GMTSAR landmask) | |
sudo apt install -y gmt | |
# add missed package | |
sudo apt install -y make | |
# vtk rendering | |
sudo apt install -y xvfb | |
- name: Compile GMTSAR | |
run: | | |
git config --global advice.detachedHead false | |
git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR | |
cd GMTSAR | |
git checkout e98ebc0f4164939a4780b1534bac186924d7c998 | |
autoconf | |
./configure --with-orbits-dir=/tmp CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
make CFLAGS='-z muldefs' LDFLAGS='-z muldefs' | |
make install | |
# check installation | |
export PATH=$PATH:${{ github.workspace }}/GMTSAR/bin | |
echo "Start gmtsar_sharedir.csh" | |
gmtsar_sharedir.csh | |
- name: Install PyGMTSAR | |
run: | | |
# vtk rendering | |
pip3 install pyvista panel | |
pip3 install -e ./pygmtsar/ | |
- name: Run test | |
working-directory: tests | |
run: | | |
export PATH=$PATH:/home/runner/work/gmtsar/gmtsar/GMTSAR/bin | |
Xvfb :99 -screen 0 800x600x24 > /dev/null 2>&1 & | |
export DISPLAY=:99 | |
export XVFB_PID=$! | |
# remove Google Colab specific commands and add __main__ section | |
cat imperial_valley_2015.py \ | |
| sed '/if \x27google\.colab\x27 in sys\.modules:/,/^$/d' \ | |
| sed 's/^[[:blank:]]*!.*$//' \ | |
| awk '/username = \x27GoogleColab2023\x27/ {print "if __name__ == \x27__main__\x27:"; indent=1} {if(indent) sub(/^/, " "); print}' \ | |
> imperial_valley_2015.fixed.py | |
python3 imperial_valley_2015.fixed.py | |
- name: Archive test results | |
uses: actions/upload-artifact@v3 | |
with: | |
name: Plots (${{ matrix.os }}, ${{ matrix.python-version }}) | |
path: tests/*.jpg | |
if-no-files-found: error |