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Fix CI scripts

Fix CI scripts #249

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: MacOS tests
on:
push:
branches: [ "pygmtsar2" ]
pull_request:
branches: [ "pygmtsar2" ]
permissions:
contents: read
jobs:
Pico_do_Fogo_2014:
strategy:
fail-fast: false
matrix:
os: [macos-12]
python-version: ["3.11"]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install system dependencies
run: |
uname -a
# prepare system
brew install wget libtiff hdf5 gmt ghostscript autoconf
- name: Compile GMTSAR
run: |
git config --global advice.detachedHead false
git clone --branch master https://github.com/gmtsar/gmtsar GMTSAR
cd GMTSAR
git checkout e98ebc0f4164939a4780b1534bac186924d7c998
autoconf
./configure --with-orbits-dir=/tmp
make
make install
- name: Install PyGMTSAR
run: |
pip3 install pyvista panel
pip3 install -e ./pygmtsar/
- name: Run test
working-directory: tests
run: |
export PATH=$PATH:${{ github.workspace }}/GMTSAR/bin
ulimit -n 10000
# remove Google Colab specific commands and add __main__ section
cat pico_do_fogo_volcano_eruption_2014.py \
| sed '/if \x27google\.colab\x27 in sys\.modules:/,/^$/d' \
| sed 's/^[[:blank:]]*!.*$//' \
| awk '/username = \x27GoogleColab2023\x27/ {print "if __name__ == \x27__main__\x27:"; indent=1} {if(indent) sub(/^/, " "); print}' \
> pico_do_fogo_volcano_eruption_2014.fixed.py
python3 pico_do_fogo_volcano_eruption_2014.fixed.py
- name: Archive test results
uses: actions/upload-artifact@v3
with:
name: Plots (${{ matrix.os }}, ${{ matrix.python-version }})
path: tests/*.jpg
if-no-files-found: error