Skip to content

Issues: AlexsLemonade/OpenScPCA-analysis

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

37 Open 359 Closed
37 Open 359 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Create a release: 2024-12-01 release
#920 opened Dec 1, 2024 by github-actions bot
2 tasks
Generate clustering results for all samples in SCPCP000015 analysis
#915 opened Nov 27, 2024 by allyhawkins
@allyhawkins
Regenerate notebooks for cell-type-wilms-tumor-06
#906 opened Nov 20, 2024 by sjspielman
@sjspielman
9
Update report to compare clustering results to cell types and marker gene sets in Ewing module analysis
#896 opened Nov 19, 2024 by allyhawkins
@allyhawkins
Exploratory notebook for defining consensus cell types analysis
#889 opened Nov 15, 2024 by allyhawkins
2
Assign cell ontology identifiers to cell types in CellAssign reference analysis
#887 opened Nov 15, 2024 by allyhawkins
@allyhawkins
Decrease size of docker image for Ewing's module
#884 opened Nov 15, 2024 by allyhawkins
@allyhawkins
4
Integration of the SCPCP000006 Wilms tumor dataset analysis
#857 opened Nov 5, 2024 by maud-p
3 tasks
Improve Wilms Tumor Dataset Annotation (SCPCP000006) - explore predicted.score and has_cnv.score thresholds analysis
#856 opened Nov 5, 2024 by maud-p
3 tasks
2
Modify/explore clustering for Wilms tumor annotation (SCPCP000014) analysis
#840 opened Oct 24, 2024 by JingxuanChen7
First draft of annotations for SCPCP000006 analysis
#839 opened Oct 24, 2024 by maud-p
1
Docs request: FAQ about gene id conversion
#837 opened Oct 22, 2024 by jashapiro
1
cell type/tumor annotation for ETP T-ALL (SCPCP000003) analysis
#822 opened Oct 16, 2024 by UTSouthwesternDSSR
Attempt to identify tumor cells in those non-ETP samples without B cells (SCPCP000003) analysis
#811 opened Oct 15, 2024 by UTSouthwesternDSSR
Keep tabs on Rhtslib installation in Dockerfiles OpenScPCA admin Issue for an OpenScPCA maintainer
#803 opened Oct 8, 2024 by sjspielman
Add docs about rOpenScPCA and hello-clusters
#799 opened Oct 7, 2024 by sjspielman
@sjspielman
Add notebook to demonstrate sweeping cluster parameters with rOpenScPCA
#797 opened Oct 7, 2024 by sjspielman
@sjspielman
Add notebook to demonstrate clustering with rOpenScPCA
#796 opened Oct 7, 2024 by sjspielman
1
@sjspielman
1
05_ aneuploidy inference using copykat and infercnv for a subselection of Wilms tumor from SCPCP000006 analysis
#790 opened Oct 7, 2024 by maud-p
3
celltype/tumor annotation for non-ETP T-ALL (SCPCP000003) analysis
#787 opened Oct 1, 2024 by UTSouthwesternDSSR
Initiation of SCPCP000001 analysis
#778 opened Sep 24, 2024 by georginaalbadri
5
Annotation (label transfer) exploration for SCPCP000006 analysis
#774 opened Sep 23, 2024 by maud-p
Celltype annotation for non-ETP ALL (SCPCP000003) analysis
#761 opened Sep 13, 2024 by UTSouthwesternDSSR
DSRCT Dataset Analysis (SCPCP000013) #583 analysis
#701 opened Aug 7, 2024 by danhtruong
1
Cell Type Annotation of Osteosarcoma snRNA-seq Data (SCPCP000017) analysis
#687 opened Aug 3, 2024 by yutarohtanaka
1
ProTip! Find all open issues with in progress development work with linked:pr.