Here we provide an initial portal for accessing single-cell RNAseq taxonomies from the Allen Institute and other publications.
Data can be download using the following aws s3 command line call: aws s3 cp "S3-URI" .
From Zemke et al. 2023 we are providing a taxonomy of motor cortex per species.
| Taxonomy | S3-URI |
|---|---|
| BICCN_M1_Human | s3://released-taxonomies-802451596237-us-west-2/BICCN_Zemke_et_al_2023/BICCN_M1_Human.h5ad |
| BICCN_M1_Mouse | s3://released-taxonomies-802451596237-us-west-2/BICCN_Zemke_et_al_2023/BICCN_M1_Mouse.h5ad |
| BICCN_M1_Macaque | s3://released-taxonomies-802451596237-us-west-2/BICCN_Zemke_et_al_2023/BICCN_M1_Macaque.h5ad |
| BICCN_M1_Marmoset | s3://released-taxonomies-802451596237-us-west-2/BICCN_Zemke_et_al_2023/BICCN_M1_Marmoset.h5ad |
From the Cross Areal study by Jorstad et al. 2023 we are providing a taxonomy per cortical region.
| Taxonomy | S3-URI |
|---|---|
| CrossAreal_A1 | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_A1.h5ad |
| CrossAreal_ACC | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_ACC.h5ad |
| CrossAreal_ANG | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_ANG.h5ad |
| CrossAreal_DLPFC | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_DLPFC.h5ad |
| CrossAreal_M1 | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_M1.h5ad |
| CrossAreal_MTG | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_MTG.h5ad |
| CrossAreal_S1 | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_S1.h5ad |
| CrossAreal_V1 | s3://released-taxonomies-802451596237-us-west-2/CrossAreal_Jorstad_et_al_2023/CrossAreal_V1.h5ad |
From the Great Apes study by Jorstad et al. 2023 we are providing a taxonomy per species.
| Taxonomy | S3-URI |
|---|---|
| GreatApes_Human | s3://released-taxonomies-802451596237-us-west-2/GreatApes_Jorstad_et_al_2023/GreatApes_Human.h5ad |
| GreatApes_Gorilla | s3://released-taxonomies-802451596237-us-west-2/GreatApes_Jorstad_et_al_2023/GreatApes_Gorilla.h5ad |
| GreatApes_Chimp | s3://released-taxonomies-802451596237-us-west-2/GreatApes_Jorstad_et_al_2023/GreatApes_Chimp.h5ad |
| GreatApes_Macaque | s3://released-taxonomies-802451596237-us-west-2/GreatApes_Jorstad_et_al_2023/GreatApes_Macaque.h5ad |
| GreatApes_Marmoset | s3://released-taxonomies-802451596237-us-west-2/GreatApes_Jorstad_et_al_2023/GreatApes_Marmoset.h5ad |