irods_mds_to_db

#!/bin/bash
#
# Shell script to run a JWST iRods image metadata processing pipeline from inside the
# ImdTk Docker container using the tools it contains. This script launches the
# ImdTk container and runs the pipeline in the container environment.
#

# echo "ARGS=$*"

PROG=`basename $0`
EP=irods_mmd_pgsql_pipe

Usage () {
   echo "Usage: $PROG [-h] [-t] irods_image_directory collection_name [other-args]"
   echo "where:"
   echo "   -h or --help = print usage message and exit."
   echo "   -t = use test (development) container [default: latest production container]."
   echo "   irods_image_directory = the path to an iRods dir of FITS images to be processed."
   echo "   collection_name = the name for this collection of images in the DB."
   echo "   other-args = additional arguments to the $EP program."
}

IMG='imdtk:latest'

while :; do
    case "$1" in
        -h | --help)
            Usage; exit 0;;
        -t)
            IMG='imdtk:test' ;;
        *) break;;
    esac
    shift
done

# echo "ARGS=$*"

if [ $# -lt 2 ]; then
    Usage
    exit 2
fi

IMG_DIR=${1}
COLLECTION=${2}
shift
shift

docker run -it --rm --network vos_net --name imdtk$$ -v ${HOME}/.irods:/imdtk/.irods:ro -v ${PWD}/work:/work --entrypoint ${EP} ${IMG} -idir ${IMG_DIR} -c ${COLLECTION} $@