From 43651053fddab70d6eb02ad3232b9a923e3a5611 Mon Sep 17 00:00:00 2001
From: e-koch <koch.eric.w@gmail.com>
Date: Tue, 13 Oct 2015 10:53:44 -0600
Subject: [PATCH] Add linear modelling script!

---
 Examples/FactorialAnalysis.R | 58 ++++++++++++++++++++++++++++++++++++
 1 file changed, 58 insertions(+)
 create mode 100644 Examples/FactorialAnalysis.R

diff --git a/Examples/FactorialAnalysis.R b/Examples/FactorialAnalysis.R
new file mode 100644
index 00000000..ff9b84c9
--- /dev/null
+++ b/Examples/FactorialAnalysis.R
@@ -0,0 +1,58 @@
+library(lme4)
+library(xtable)
+library(MASS)
+###########
+
+resFace0=read.table('distances_0_0.csv',header=T,sep=',')
+resFace2=read.table('distances_2_2.csv',header=T,sep=',')
+
+# resFace0=resFace0[-c(1:32),]
+# resFace2=resFace2[-c(1:32),]
+
+##Create Indicator for which Fiducial
+Cube=rep(rep(c(1:5),each=32),2)
+##Create indicator for the Face
+fc=rep(c(-1,1),each=160)
+###############
+factors=c('Solenoidal.Fraction','Virial.Parameter','k', 'Mach.Number','Plasma.Beta')
+des0=resFace0[,factors]
+
+colnames(des0)=c('sf','vp','k','m','pb')
+res0=resFace0[,!(names(resFace0)%in%c('Ind',factors,'Fiducial','Designs', 'X'))]
+stats=colnames(res0)
+#des0=as.numeric(des0)
+#res0=as.numeric(res0)
+
+
+des2=resFace2[,factors]
+colnames(des2)=c('sf','vp','k','m','pb')
+res2=resFace2[,!(names(resFace2)%in%c('Ind',factors,'Fiducial','Designs', 'X'))]
+#des2=as.numeric(des2)
+#res2=as.numeric(res2)
+
+
+data=cbind(Cube,fc,rbind(des0,des2),rbind(res0,res2))
+
+apply(data,2,mean)
+
+##############
+numStat=length(stats)
+indStat=1:numStat
+
+TVals=matrix(0,nrow=63,ncol=numStat)
+
+for(i in 1:numStat)
+{
+    print(stats[i])
+    mod=paste(stats[i],'~fc*sf*vp*k*m*pb+(1|Cube)',sep='')
+    ReMod=lmer(mod,REML=F,data=data)
+
+    TVals[,i]=matrix(summary(ReMod)$coeff[-1,3,drop=F])
+}
+
+TVals=data.frame(TVals)
+colnames(TVals)=stats
+rownames(TVals)=rownames(summary(ReMod)$coeff[-1,3,drop=F])
+
+write.table(TVals,'ResultsFactorial.csv',sep=',')
+write.table(data, 'DataforFits.csv', sep=',')