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@BFSSI-Bioinformatics-Lab

BFSSI Bioinformatics

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  1. centreseq centreseq Public

    Easily establish a core genome among bacterial strains

    Python 2

  2. BaseMountRetrieve BaseMountRetrieve Public

    Package for retrieving files from BaseMount in the output style of a local MiSeq run

    Python 1

  3. ProkaryoteAssembly ProkaryoteAssembly Public

    Simple CLI assembly pipeline tuned for prokaryotes

    Python 1

  4. EnteroTyper EnteroTyper Public

    Scripts to type and compare assemblies based off of Enterobase schemes

    Python 1

  5. vfdbQuery vfdbQuery Public

    vfdbQuery is a simple script for querying an input genome assembly against the Virulence Factor Database (VFDB)

    Python 1

  6. CCHSNutritionViz2020 CCHSNutritionViz2020 Public

    HTML 1

Repositories

Showing 10 of 20 repositories
  • miseq_portal Public

    Internal web portal for analyzing and retrieving NGS data

    BFSSI-Bioinformatics-Lab/miseq_portal’s past year of commit activity
    Python 0 MIT 0 0 12 Updated Nov 29, 2024
  • Microorganism-Dashboard-D3-fsdat Public

    Food Surveillance Data Analytics Tool - Microbiology Dashboard

    BFSSI-Bioinformatics-Lab/Microorganism-Dashboard-D3-fsdat’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Nov 29, 2024
  • CCHS-food-source-contribution Public

    Food Source Contribution Tool

    BFSSI-Bioinformatics-Lab/CCHS-food-source-contribution’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Nov 28, 2024
  • flaime-2.0 Public
    BFSSI-Bioinformatics-Lab/flaime-2.0’s past year of commit activity
    JavaScript 0 0 11 1 Updated Nov 26, 2024
  • bmh_sample_tracker Public

    A sample tracking app for the Bureau of Microbial Hazards

    BFSSI-Bioinformatics-Lab/bmh_sample_tracker’s past year of commit activity
    Python 0 MIT 0 1 7 Updated Nov 11, 2024
  • cqt_customer_query_tool Public
    BFSSI-Bioinformatics-Lab/cqt_customer_query_tool’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 16, 2024
  • flaime Public

    Web app for monitoring the online food landscape

    BFSSI-Bioinformatics-Lab/flaime’s past year of commit activity
    JavaScript 0 MIT 0 0 19 Updated Oct 9, 2024
  • BaseMountRetrieve Public

    Package for retrieving files from BaseMount in the output style of a local MiSeq run

    BFSSI-Bioinformatics-Lab/BaseMountRetrieve’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 29, 2024
  • tds-dietary-exposure-tool Public

    Total Diet Study Dietary Exposure Tool

    BFSSI-Bioinformatics-Lab/tds-dietary-exposure-tool’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Apr 26, 2024
  • CCHSNutritionViz2020 Public
    BFSSI-Bioinformatics-Lab/CCHSNutritionViz2020’s past year of commit activity
    HTML 1 0 0 10 Updated May 1, 2023
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