update Deseq_Report.Rmd.in to fix error: #3
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name: build | |
on: | |
push: | |
pull_request: | |
schedule: | |
# weekly builds to make sure it works with the latest version of Guix | |
- cron: '39 3 * * 0' | |
jobs: | |
build: | |
name: make distcheck | |
runs-on: ubuntu-latest | |
steps: | |
- name: Install GNU Guix | |
uses: PromyLOPh/[email protected] | |
with: | |
pullAfterInstall: false | |
- name: Describe Guix | |
run: echo "guix-commit=$(guix describe | grep commit | join -a1 -o1.2 - /dev/null)" >> $GITHUB_OUTPUT | |
id: guix-commit | |
- name: Guix cache | |
id: guix-cache | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cache/guix | |
key: guix-cache-${{ steps.guix-commit.outputs.guix-commit }} | |
- name: Checkout | |
uses: actions/checkout@v3 | |
with: | |
submodules: true | |
- name: Build Guix environment | |
if: steps.guix-cache.outputs.cache-hit != 'true' | |
run: | | |
mkdir -p ~/.cache/guix | |
guix environment -l guix.scm --root=env -- echo done | |
guix archive --export --recursive $(readlink -f env) > ~/.cache/guix/env | |
cp /etc/guix/signing-key.pub ~/.cache/guix/ | |
- name: Authorize cached signing key | |
if: steps.guix-cache.outputs.cache-hit == 'true' | |
run: | | |
cat ~/.cache/guix/signing-key.pub | sudo guix archive --authorize | |
- name: Import Guix environment | |
if: steps.guix-cache.outputs.cache-hit == 'true' | |
run: | | |
du -sh ~/.cache/guix/env | |
cat ~/.cache/guix/env | sudo guix archive --import | |
- name: Bootstrap | |
run: guix shell -D -f guix.scm -- ./bootstrap.sh | |
- name: Configure | |
run: guix shell -D -f guix.scm -- ./configure | |
- name: Build | |
run: guix shell -D -f guix.scm -- make -j | |
- name: Distcheck | |
env: | |
VERBOSE: "true" | |
run: guix shell -D -f guix.scm -- make distcheck |