BABC Failure that remains after Eye Center Fix

So this fixed worked on all the failed datasets except the following which fails in the BABC step as described below:

FIXED BY FIXING IMAGES PHYSICAL SPACES

On wiki:

Dataset: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/TissueClassify/BABC

And the BRAINSABC command that fails: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/TissueClassify/BABC /command.txt

/Shared/pinc/sharedopt/20170302/RHEL7/NEP-11/bin/BRAINSABC --atlasDefinition /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/ExtendedAtlasDefinition.xml --atlasToSubjectTransform atlas_to_subject.h5 --atlasToSubjectTransformType SyN --debuglevel 0 --filterIteration 3 --filterMethod None --inputVolumeTypes T1,T2 --inputVolumes /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/LandmarkInitialize/BROIAuto_cropped/Cropped_BCD_ACPC_Aligned.nii.gz --inputVolumes /Shared/hothlab/structural/MR/D006/64428017/ANONRAW/D006_64428017_T2_SAG_CROP.nii.gz --interpolationMode Linear --maxBiasDegree 0 --maxIterations 2 --outputDir ./ --outputDirtyLabels volume_label_seg.nii.gz --outputFormat NIFTI --outputLabels brain_label_seg.nii.gz --outputVolumes D006_64428017_T1_EYES_FIXED_corrected.nii.gz --outputVolumes D006_64428017_T2_SAG_CROP_corrected.nii.gz --posteriorTemplate POSTERIOR_%s.nii.gz --purePlugsThreshold 0.100000 --restoreState /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/TissueClassify/AtlasToSubjectANTsPreABC_SyN/SavedInternalSyNState.h5 --saveState SavedBABCInternalSyNState.h5 --useKNN

Here is last run logger: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/scripts/last_run.logger {'--ExperimentConfig': 'axelson050918.config', '--dry-run': False, '--help': False, '--pe': 'RHEL7ARGON', '--rewrite-datasinks': False, '--use-sentinal': True, '--version': False, '--wfrun': 'SGE', '--workphase': 'atlas-based-reference', 'SESSIONS': ['64428017']}

Configuring environment... WARNING: Experiment directory already exists. Continuing will overwrite the previous results... Path: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE WARNING: Experiment directory already exists. Continuing will overwrite the previous results... Path: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results Searching for atlas directory in cache... Atlas directory found at /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas 'jointFusion_2015_wholebrain' will be run with a specified 'jointfusion_atlas_db_base'.

====================================================================================================

NEW PATH env /Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup/bin:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/bin:/opt/apps/graphviz/2.40.1/bin/dot:/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/bin:/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/bin:/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/bin:/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/bin:/opt/sge/bin:/opt/sge/bin/lx-amd64:/opt/sge/bin:/opt/sge/bin/lx-amd64:/opt/sge/bin:/opt/sge/bin/lx-amd64:/opt/sge/bin:/opt/sge/bin/lx-amd64:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/Users/axelsone/.local/bin:/Users/axelsone/bin

NEW PYTHONPATH env ['', '/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup', '/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup/workflows', '/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python36.zip', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/lib-dynload', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/Sphinx-1.5.1-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/funcsigs-1.0.2-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/prov-1.5.0-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/simplejson-3.10.0-py3.6-linux-x86_64.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/traits-4.6.0-py3.6-linux-x86_64.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nibabel-2.1.0-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/rdflib-4.2.2-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/isodate-0.5.4-py3.6.egg', '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg']

@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ /Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup/workflows:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ /Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/bin:/opt/apps/graphviz/2.40.1/bin/dot @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ Copying Atlas directory and determining appropriate Nipype options... *** Note Crash file will be written to '/tmp' Getting session(s) from database... d1.keys()::: [] d2.keys()::: ['env', 'prefix', 'virtualenv_dir'] d1.keys()::: ['env', 'prefix', 'virtualenv_dir'] d2.keys()::: ['cachedir', 'resultdir', 'use_registration_masking', 'atlascache', 'dbfile', 'components', 'jointfusion_atlas_db_base', 'labelmap_colorlookup_table', 'relabel2lobes_filename', 'workflow_phase'] d1.keys()::: ['env', 'prefix', 'virtualenv_dir', 'cachedir', 'resultdir', 'use_registration_masking', 'atlascache', 'dbfile', 'components', 'jointfusion_atlas_db_base', 'labelmap_colorlookup_table', 'relabel2lobes_filename', 'workflow_phase'] d2.keys()::: ['ds_overwrite', 'CRASHDUMP_DIR', 'plugin_name', 'plugin_args', 'execution', 'logging'] d1.keys()::: ['env', 'prefix', 'virtualenv_dir', 'cachedir', 'resultdir', 'use_registration_masking', 'atlascache', 'dbfile', 'components', 'jointfusion_atlas_db_base', 'labelmap_colorlookup_table', 'relabel2lobes_filename', 'workflow_phase', 'ds_overwrite', 'CRASHDUMP_DIR', 'plugin_name', 'plugin_args', 'execution', 'logging'] d2.keys()::: ['modules', 'queue', 'long_q', 'qstat', 'qstat_cached'] Single_subject ['all']: Using cached database, /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/InternalWorkflowSubjectDB.db !=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!= Doing sessions {'64428017'} !=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!=!= LOOKING FOR DIRECTORY /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/spatialImages/rho.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/TissueClassify/complete_brainlabels_seg.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/TissueClassify/t1_average_BRAINSABC.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/hncma_atlas.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/l_accumben_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/l_caudate_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/l_globus_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/l_hippocampus_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/l_putamen_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/l_thalamus_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/left_hemisphere_wm.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/phi.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/r_accumben_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/r_caudate_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/r_globus_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/r_hippocampus_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/r_putamen_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/r_thalamus_ProbabilityMap.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/rho.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/right_hemisphere_wm.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/template_WMPM2_labels.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/template_headregion.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/template_leftHemisphere.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/template_nac_labels.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/template_rightHemisphere.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/template_ventricles.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/WarpedAtlas2Subject/theta.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/TissueClassify/JointFusion_HDAtlas20_2015_lobar_label.nii.gz MISSING: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results/HOTH/D006/64428017/TissueClassify/lobeVolumes_JSON.json PROCESSING INCOMPLETE: at least 1 required file does not exists Multimodal processing starts ...

              Denoise is ignored when the session is in Blacklist
              There is known issue that Landmark Detection algorithm
              may not work well with denoising step

Multimodal processing in jointFusion master_config {'env': {'PYTHONPATH': '/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup/workflows:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup', 'PATH': '/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/bin:/opt/apps/graphviz/2.40.1/bin/dot'}, 'prefix': '', 'virtualenv_dir': '/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/bin', 'cachedir': '/Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE', 'resultdir': '/Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_Results', 'use_registration_masking': True, 'atlascache': '/Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas', 'dbfile': '/Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/scripts/eyes.csv', 'components': ['denoise', 'landmark', 'auxlmk', 'tissue_classify', 'warp_atlas_to_subject', 'jointfusion_2015_wholebrain'], 'jointfusion_atlas_db_base': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/baw20160523WholeBrainAtlasDenoisedList_fixed.csv', 'labelmap_colorlookup_table': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/BAWHDAdultAtlas_FreeSurferConventionColorLUT_20160524.txt', 'relabel2lobes_filename': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/Label2Lobes_Ver20160524.csv', 'workflow_phase': 'atlas-based-reference', 'ds_overwrite': True, 'CRASHDUMP_DIR': '/tmp', 'plugin_name': 'SGE', 'plugin_args': {'template': '#!/bin/bash\nsource ~/.bash_profile\nmodule load intel/2017.1\nmodule load ncurses/6.0\nmodule load cmake/3.7.2\nmodule load graphviz/2.40.1\nsource /Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/bin/bin/activate\nexport PYTHONPATH=/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup/workflows:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:$PYTHONPATH\nexport PATH=/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/bin:/opt/apps/graphviz/2.40.1/bin/dot:$PATH\necho "STARTED at: $(date +'%F-%T')"\necho "Ran on: $(hostname)"\necho "NSLOTS: ${NSLOTS}"\necho "========= CUSTOM ENVIRONMENT SETTINGS =========="\necho "export PYTHONPATH=/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup/workflows:/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/BRAINSTools/AutoWorkup:$PYTHONPATH\nexport PATH=/Shared/pinc/sharedopt/20170302/RHEL7/NEP-intel/bin:/opt/apps/graphviz/2.40.1/bin/dot:$PATH"\necho "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^"\nprintenv\necho "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^"\nTEMP=$(pwd)\ncd /Shared/sinapse\ncd /Shared/johnsonhj\ncd /Shared/paulsen\ncd ${TEMP}\n## NOTE: nipype inserts the actual commands that need running below this section.\n', 'qsub_args': '-S /bin/bash -cwd -pe smp 1 -o /dev/null -e /dev/null -q PINC,CCOM', 'qstatProgramPath': 'qstat', 'qstatCachedProgramPath': 'qstat'}, 'execution': {'stop_on_first_crash': 'true', 'stop_on_first_rerun': 'false', 'hash_method': 'timestamp', 'single_thread_matlab': 'true', 'use_relative_paths': 'false', 'remove_node_directories': 'false', 'remove_unnecessary_outputs': 'true', 'local_hash_check': 'true', 'job_finished_timeout': 25, 'crashdump_dir': '/tmp'}, 'logging': {'workflow_level': 'INFO', 'filemanip_level': 'INFO', 'interface_level': 'INFO', 'log_directory': '/Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE'}, 'modules': ['intel/2017.1', 'ncurses/6.0', 'cmake/3.7.2', 'graphviz/2.40.1'], 'queue': '-q PINC,CCOM', 'long_q': '-q PINC,CCOM', 'qstat': 'qstat', 'qstat_cached': 'qstat'} master_config['jointfusion_atlas_db_base'] /Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/baw20160523WholeBrainAtlasDenoisedList_fixed.csv "13512", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/13512/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/13512/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/13512/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/13512/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/13512/registrationMask.nii.gz'}

"14165", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/14165/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/14165/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/14165/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/14165/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/14165/registrationMask.nii.gz'}

"21003", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/21003/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/21003/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/21003/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/21003/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/21003/registrationMask.nii.gz'}

"23163", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23163/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23163/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23163/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23163/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23163/registrationMask.nii.gz'}

"23687", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23687/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23687/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23687/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23687/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/23687/registrationMask.nii.gz'}

"27612", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/27612/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/27612/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/27612/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/27612/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/27612/registrationMask.nii.gz'}

"35888", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/35888/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/35888/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/35888/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/35888/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/35888/registrationMask.nii.gz'}

"37960", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/37960/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/37960/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/37960/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/37960/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/37960/registrationMask.nii.gz'}

"49543", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/49543/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/49543/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/49543/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/49543/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/49543/registrationMask.nii.gz'}

"52712", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/52712/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/52712/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/52712/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/52712/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/52712/registrationMask.nii.gz'}

"53657", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/53657/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/53657/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/53657/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/53657/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/53657/registrationMask.nii.gz'}

"55648", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/55648/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/55648/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/55648/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/55648/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/55648/registrationMask.nii.gz'}

"58446", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/58446/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/58446/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/58446/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/58446/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/58446/registrationMask.nii.gz'}

"68653", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/68653/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/68653/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/68653/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/68653/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/68653/registrationMask.nii.gz'}

"75094", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75094/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75094/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75094/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75094/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75094/registrationMask.nii.gz'}

"75909", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75909/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75909/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75909/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75909/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/75909/registrationMask.nii.gz'}

"91300", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91300/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91300/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91300/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91300/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91300/registrationMask.nii.gz'}

"91626", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91626/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91626/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91626/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91626/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/91626/registrationMask.nii.gz'}

"93075", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/93075/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/93075/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/93075/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/93075/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/93075/registrationMask.nii.gz'}

"99056", {'t1':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/99056/t1_average_BRAINSABC_GaussianDenoised.nii.gz','t2':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/99056/t2_average_BRAINSABC_GaussianDenoised.nii.gz','label':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/99056/wholeBrain_label.nii.gz','lmks':'/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/99056/BCD_ACPC_Landmarks.fcsv','registration_mask': '/Shared/pinc/sharedopt/ReferenceData/20160523_HDAdultAtlas/99056/registrationMask.nii.gz'}

Starting session 64428017 Running workflow... 180831-08:41:43,533 workflow INFO: Workflow singleSession_D006_64428017 settings: ['check', 'execution', 'logging'] 180831-08:41:45,364 workflow INFO: Running in parallel. 180831-08:41:45,413 workflow INFO: Pending[0] Submitting[27] jobs Slots[inf] 180831-08:41:45,413 workflow INFO: Submitting: makeLabelDict ID: 0 180831-08:41:45,421 workflow INFO: [Job finished] jobname: makeLabelDict jobid: 0 180831-08:41:45,422 workflow INFO: Finished submitting: makeLabelDict ID: 0 180831-08:41:45,422 workflow INFO: Submitting: makeLabelDict ID: 1 180831-08:41:45,428 workflow INFO: [Job finished] jobname: makeLabelDict jobid: 1 180831-08:41:45,429 workflow INFO: Finished submitting: makeLabelDict ID: 1 180831-08:41:45,429 workflow INFO: Submitting: atlasMakeMultimodalInput99056 ID: 2 180831-08:41:45,447 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput99056 jobid: 2 180831-08:41:45,448 workflow INFO: Finished submitting: atlasMakeMultimodalInput99056 ID: 2 180831-08:41:45,448 workflow INFO: Submitting: atlasMakeMultimodalInput93075 ID: 3 180831-08:41:45,452 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput93075 jobid: 3 180831-08:41:45,453 workflow INFO: Finished submitting: atlasMakeMultimodalInput93075 ID: 3 180831-08:41:45,453 workflow INFO: Submitting: atlasMakeMultimodalInput91626 ID: 4 180831-08:41:45,471 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput91626 jobid: 4 180831-08:41:45,472 workflow INFO: Finished submitting: atlasMakeMultimodalInput91626 ID: 4 180831-08:41:45,472 workflow INFO: Submitting: atlasMakeMultimodalInput91300 ID: 5 180831-08:41:45,476 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput91300 jobid: 5 180831-08:41:45,477 workflow INFO: Finished submitting: atlasMakeMultimodalInput91300 ID: 5 180831-08:41:45,478 workflow INFO: Submitting: atlasMakeMultimodalInput75909 ID: 6 180831-08:41:45,495 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput75909 jobid: 6 180831-08:41:45,496 workflow INFO: Finished submitting: atlasMakeMultimodalInput75909 ID: 6 180831-08:41:45,496 workflow INFO: Submitting: atlasMakeMultimodalInput75094 ID: 7 180831-08:41:45,520 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput75094 jobid: 7 180831-08:41:45,521 workflow INFO: Finished submitting: atlasMakeMultimodalInput75094 ID: 7 180831-08:41:45,521 workflow INFO: Submitting: atlasMakeMultimodalInput68653 ID: 8 180831-08:41:45,538 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput68653 jobid: 8 180831-08:41:45,539 workflow INFO: Finished submitting: atlasMakeMultimodalInput68653 ID: 8 180831-08:41:45,539 workflow INFO: Submitting: atlasMakeMultimodalInput58446 ID: 9 180831-08:41:45,553 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput58446 jobid: 9 180831-08:41:45,554 workflow INFO: Finished submitting: atlasMakeMultimodalInput58446 ID: 9 180831-08:41:45,554 workflow INFO: Submitting: atlasMakeMultimodalInput55648 ID: 10 180831-08:41:45,566 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput55648 jobid: 10 180831-08:41:45,567 workflow INFO: Finished submitting: atlasMakeMultimodalInput55648 ID: 10 180831-08:41:45,567 workflow INFO: Submitting: atlasMakeMultimodalInput53657 ID: 11 180831-08:41:45,571 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput53657 jobid: 11 180831-08:41:45,572 workflow INFO: Finished submitting: atlasMakeMultimodalInput53657 ID: 11 180831-08:41:45,572 workflow INFO: Submitting: atlasMakeMultimodalInput52712 ID: 12 180831-08:41:45,576 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput52712 jobid: 12 180831-08:41:45,577 workflow INFO: Finished submitting: atlasMakeMultimodalInput52712 ID: 12 180831-08:41:45,577 workflow INFO: Submitting: atlasMakeMultimodalInput49543 ID: 13 180831-08:41:45,581 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput49543 jobid: 13 180831-08:41:45,582 workflow INFO: Finished submitting: atlasMakeMultimodalInput49543 ID: 13 180831-08:41:45,582 workflow INFO: Submitting: atlasMakeMultimodalInput37960 ID: 14 180831-08:41:45,586 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput37960 jobid: 14 180831-08:41:45,587 workflow INFO: Finished submitting: atlasMakeMultimodalInput37960 ID: 14 180831-08:41:45,587 workflow INFO: Submitting: atlasMakeMultimodalInput35888 ID: 15 180831-08:41:45,591 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput35888 jobid: 15 180831-08:41:45,592 workflow INFO: Finished submitting: atlasMakeMultimodalInput35888 ID: 15 180831-08:41:45,592 workflow INFO: Submitting: atlasMakeMultimodalInput27612 ID: 16 180831-08:41:45,596 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput27612 jobid: 16 180831-08:41:45,597 workflow INFO: Finished submitting: atlasMakeMultimodalInput27612 ID: 16 180831-08:41:45,597 workflow INFO: Submitting: atlasMakeMultimodalInput23687 ID: 17 180831-08:41:45,602 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput23687 jobid: 17 180831-08:41:45,603 workflow INFO: Finished submitting: atlasMakeMultimodalInput23687 ID: 17 180831-08:41:45,603 workflow INFO: Submitting: atlasMakeMultimodalInput23163 ID: 18 180831-08:41:45,606 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput23163 jobid: 18 180831-08:41:45,608 workflow INFO: Finished submitting: atlasMakeMultimodalInput23163 ID: 18 180831-08:41:45,608 workflow INFO: Submitting: atlasMakeMultimodalInput21003 ID: 19 180831-08:41:45,611 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput21003 jobid: 19 180831-08:41:45,612 workflow INFO: Finished submitting: atlasMakeMultimodalInput21003 ID: 19 180831-08:41:45,612 workflow INFO: Submitting: atlasMakeMultimodalInput14165 ID: 20 180831-08:41:45,616 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput14165 jobid: 20 180831-08:41:45,617 workflow INFO: Finished submitting: atlasMakeMultimodalInput14165 ID: 20 180831-08:41:45,617 workflow INFO: Submitting: atlasMakeMultimodalInput13512 ID: 21 180831-08:41:45,621 workflow INFO: [Job finished] jobname: atlasMakeMultimodalInput13512 jobid: 21 180831-08:41:45,623 workflow INFO: Finished submitting: atlasMakeMultimodalInput13512 ID: 21 180831-08:41:45,623 workflow INFO: Submitting: BBCUTAtlas_W64428017 ID: 22 180831-08:41:45,658 workflow INFO: Executing node BBCUTAtlas_W64428017 in dir: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/BBCUTAtlas_W64428017 180831-08:41:45,821 workflow INFO: [Job finished] jobname: BBCUTAtlas_W64428017 jobid: 22 180831-08:41:45,822 workflow INFO: Finished submitting: BBCUTAtlas_W64428017 ID: 22 180831-08:41:45,822 workflow INFO: Submitting: BBCDAtlas_S64428017 ID: 23 180831-08:41:45,832 workflow INFO: Executing node BBCDAtlas_S64428017 in dir: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/BBCDAtlas_S64428017 180831-08:41:45,894 workflow INFO: [Job finished] jobname: BBCDAtlas_S64428017 jobid: 23 180831-08:41:45,895 workflow INFO: Finished submitting: BBCDAtlas_S64428017 ID: 23 180831-08:41:45,895 workflow INFO: Submitting: BBCDAtlas_W64428017 ID: 24 180831-08:41:45,903 workflow INFO: Executing node BBCDAtlas_W64428017 in dir: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/BBCDAtlas_W64428017 180831-08:41:45,958 workflow INFO: [Job finished] jobname: BBCDAtlas_W64428017 jobid: 24 180831-08:41:45,959 workflow INFO: Finished submitting: BBCDAtlas_W64428017 ID: 24 180831-08:41:45,959 workflow INFO: Submitting: BABCAtlas_W64428017 ID: 53 180831-08:41:45,980 workflow INFO: Executing node BABCAtlas_W64428017 in dir: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/BABCAtlas_W64428017 180831-08:41:46,82 workflow INFO: [Job finished] jobname: BABCAtlas_W64428017 jobid: 53 180831-08:41:46,83 workflow INFO: Finished submitting: BABCAtlas_W64428017 ID: 53 180831-08:41:46,83 workflow INFO: Submitting: BABCXMLAtlas_64428017 ID: 56 180831-08:41:46,92 workflow INFO: Executing node BABCXMLAtlas_64428017 in dir: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/BABCXMLAtlas_64428017 180831-08:41:46,149 workflow INFO: [Job finished] jobname: BABCXMLAtlas_64428017 jobid: 56 180831-08:41:46,150 workflow INFO: Finished submitting: BABCXMLAtlas_64428017 ID: 56 180831-08:41:46,151 workflow INFO: Pending[0] Submitting[1] jobs Slots[inf] 180831-08:41:46,152 workflow INFO: Submitting: BCD ID: 25 180831-08:41:46,179 workflow INFO: [Job finished] jobname: BCD jobid: 25 180831-08:41:46,180 workflow INFO: Finished submitting: BCD ID: 25 180831-08:41:46,181 workflow INFO: Pending[0] Submitting[23] jobs Slots[inf] 180831-08:41:46,181 workflow INFO: Submitting: BROIAuto_cropped ID: 26 180831-08:41:46,209 workflow INFO: [Job finished] jobname: BROIAuto_cropped jobid: 26 180831-08:41:46,210 workflow INFO: Finished submitting: BROIAuto_cropped ID: 26 180831-08:41:46,210 workflow INFO: Submitting: BLI_13512 ID: 29 180831-08:41:46,228 workflow INFO: [Job finished] jobname: BLI_13512 jobid: 29 180831-08:41:46,229 workflow INFO: Finished submitting: BLI_13512 ID: 29 180831-08:41:46,229 workflow INFO: Submitting: BLI_14165 ID: 30 180831-08:41:46,252 workflow INFO: [Job finished] jobname: BLI_14165 jobid: 30 180831-08:41:46,253 workflow INFO: Finished submitting: BLI_14165 ID: 30 180831-08:41:46,253 workflow INFO: Submitting: BLI_21003 ID: 31 180831-08:41:46,268 workflow INFO: [Job finished] jobname: BLI_21003 jobid: 31 180831-08:41:46,269 workflow INFO: Finished submitting: BLI_21003 ID: 31 180831-08:41:46,269 workflow INFO: Submitting: BLI_23163 ID: 32 180831-08:41:46,290 workflow INFO: [Job finished] jobname: BLI_23163 jobid: 32 180831-08:41:46,292 workflow INFO: Finished submitting: BLI_23163 ID: 32 180831-08:41:46,292 workflow INFO: Submitting: BLI_23687 ID: 33 180831-08:41:46,311 workflow INFO: [Job finished] jobname: BLI_23687 jobid: 33 180831-08:41:46,312 workflow INFO: Finished submitting: BLI_23687 ID: 33 180831-08:41:46,312 workflow INFO: Submitting: BLI_27612 ID: 34 180831-08:41:46,328 workflow INFO: [Job finished] jobname: BLI_27612 jobid: 34 180831-08:41:46,329 workflow INFO: Finished submitting: BLI_27612 ID: 34 180831-08:41:46,329 workflow INFO: Submitting: BLI_35888 ID: 35 180831-08:41:46,343 workflow INFO: [Job finished] jobname: BLI_35888 jobid: 35 180831-08:41:46,344 workflow INFO: Finished submitting: BLI_35888 ID: 35 180831-08:41:46,344 workflow INFO: Submitting: BLI_37960 ID: 36 180831-08:41:46,351 workflow INFO: [Job finished] jobname: BLI_37960 jobid: 36 180831-08:41:46,352 workflow INFO: Finished submitting: BLI_37960 ID: 36 180831-08:41:46,352 workflow INFO: Submitting: BLI_49543 ID: 37 180831-08:41:46,360 workflow INFO: [Job finished] jobname: BLI_49543 jobid: 37 180831-08:41:46,361 workflow INFO: Finished submitting: BLI_49543 ID: 37 180831-08:41:46,361 workflow INFO: Submitting: BLI_52712 ID: 38 180831-08:41:46,379 workflow INFO: [Job finished] jobname: BLI_52712 jobid: 38 180831-08:41:46,380 workflow INFO: Finished submitting: BLI_52712 ID: 38 180831-08:41:46,380 workflow INFO: Submitting: BLI_53657 ID: 39 180831-08:41:46,387 workflow INFO: [Job finished] jobname: BLI_53657 jobid: 39 180831-08:41:46,388 workflow INFO: Finished submitting: BLI_53657 ID: 39 180831-08:41:46,389 workflow INFO: Submitting: BLI_55648 ID: 40 180831-08:41:46,411 workflow INFO: [Job finished] jobname: BLI_55648 jobid: 40 180831-08:41:46,412 workflow INFO: Finished submitting: BLI_55648 ID: 40 180831-08:41:46,412 workflow INFO: Submitting: BLI_58446 ID: 41 180831-08:41:46,419 workflow INFO: [Job finished] jobname: BLI_58446 jobid: 41 180831-08:41:46,420 workflow INFO: Finished submitting: BLI_58446 ID: 41 180831-08:41:46,420 workflow INFO: Submitting: BLI_68653 ID: 42 180831-08:41:46,435 workflow INFO: [Job finished] jobname: BLI_68653 jobid: 42 180831-08:41:46,436 workflow INFO: Finished submitting: BLI_68653 ID: 42 180831-08:41:46,436 workflow INFO: Submitting: BLI_75094 ID: 43 180831-08:41:46,458 workflow INFO: [Job finished] jobname: BLI_75094 jobid: 43 180831-08:41:46,459 workflow INFO: Finished submitting: BLI_75094 ID: 43 180831-08:41:46,459 workflow INFO: Submitting: BLI_75909 ID: 44 180831-08:41:46,472 workflow INFO: [Job finished] jobname: BLI_75909 jobid: 44 180831-08:41:46,473 workflow INFO: Finished submitting: BLI_75909 ID: 44 180831-08:41:46,473 workflow INFO: Submitting: BLI_91300 ID: 45 180831-08:41:46,480 workflow INFO: [Job finished] jobname: BLI_91300 jobid: 45 180831-08:41:46,481 workflow INFO: Finished submitting: BLI_91300 ID: 45 180831-08:41:46,482 workflow INFO: Submitting: BLI_91626 ID: 46 180831-08:41:46,489 workflow INFO: [Job finished] jobname: BLI_91626 jobid: 46 180831-08:41:46,490 workflow INFO: Finished submitting: BLI_91626 ID: 46 180831-08:41:46,490 workflow INFO: Submitting: BLI_93075 ID: 47 180831-08:41:46,509 workflow INFO: [Job finished] jobname: BLI_93075 jobid: 47 180831-08:41:46,510 workflow INFO: Finished submitting: BLI_93075 ID: 47 180831-08:41:46,510 workflow INFO: Submitting: BLI_99056 ID: 48 180831-08:41:46,517 workflow INFO: [Job finished] jobname: BLI_99056 jobid: 48 180831-08:41:46,519 workflow INFO: Finished submitting: BLI_99056 ID: 48 180831-08:41:46,519 workflow INFO: Submitting: BLI ID: 49 180831-08:41:46,527 workflow INFO: [Job finished] jobname: BLI jobid: 49 180831-08:41:46,528 workflow INFO: Finished submitting: BLI ID: 49 180831-08:41:46,528 workflow INFO: Submitting: BLI2Atlas ID: 51 180831-08:41:46,536 workflow INFO: [Job finished] jobname: BLI2Atlas jobid: 51 180831-08:41:46,537 workflow INFO: Finished submitting: BLI2Atlas ID: 51 180831-08:41:46,538 workflow INFO: Pending[0] Submitting[4] jobs Slots[inf] 180831-08:41:46,538 workflow INFO: Submitting: 99_makeOutImageList ID: 27 180831-08:41:46,569 workflow INFO: [Job finished] jobname: 99_makeOutImageList jobid: 27 180831-08:41:46,570 workflow INFO: Finished submitting: 99_makeOutImageList ID: 27 180831-08:41:46,570 workflow INFO: Submitting: fixedImageROIAUTOMask ID: 28 180831-08:41:46,576 workflow INFO: [Job finished] jobname: fixedImageROIAUTOMask jobid: 28 180831-08:41:46,577 workflow INFO: Finished submitting: fixedImageROIAUTOMask ID: 28 180831-08:41:46,577 workflow INFO: Submitting: atlas-based-reference_ds_64428017_lmks ID: 50 180831-08:41:46,892 workflow INFO: Finished submitting: atlas-based-reference_ds_64428017_lmks ID: 50 180831-08:41:46,892 workflow INFO: Submitting: Resample2Atlas ID: 52 180831-08:41:46,932 workflow INFO: [Job finished] jobname: Resample2Atlas jobid: 52 180831-08:41:46,934 workflow INFO: Finished submitting: Resample2Atlas ID: 52 180831-08:41:46,936 workflow INFO: Pending[1] Submitting[1] jobs Slots[inf] 180831-08:41:46,936 workflow INFO: Submitting: AtlasToSubjectANTsPreABC_Affine ID: 54 180831-08:41:46,996 workflow INFO: [Job finished] jobname: AtlasToSubjectANTsPreABC_Affine jobid: 54 180831-08:41:46,998 workflow INFO: Finished submitting: AtlasToSubjectANTsPreABC_Affine ID: 54 180831-08:41:46,999 workflow INFO: Pending[1] Submitting[1] jobs Slots[inf] 180831-08:41:46,999 workflow INFO: Submitting: AtlasToSubjectANTsPreABC_SyN ID: 55 180831-08:41:47,81 workflow INFO: [Job finished] jobname: AtlasToSubjectANTsPreABC_SyN jobid: 55 180831-08:41:47,82 workflow INFO: Finished submitting: AtlasToSubjectANTsPreABC_SyN ID: 55 180831-08:41:47,83 workflow INFO: Pending[1] Submitting[1] jobs Slots[inf] 180831-08:41:47,83 workflow INFO: Submitting: BABC ID: 57 180831-08:41:47,389 workflow INFO: Finished submitting: BABC ID: 57 180831-08:41:59,452 workflow INFO: [Job finished] jobname: atlas-based-reference_ds_64428017_lmks jobid: 50 =+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+=+-+ Error: Exception while running subjects Traceback (most recent call last): File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/pipeline/plugins/base.py", line 249, in run result=result)) File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/pipeline/plugins/base.py", line 300, in _clean_queue raise RuntimeError("".join(result['traceback'])) RuntimeError: Traceback (most recent call last): File "/Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/batch/pyscript_20180831_084147_singleSession_D006_64428017.TissueClassify_BABC.py", line 32, in result = info['node'].run(updatehash=info['updatehash']) File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/pipeline/engine/nodes.py", line 366, in run self._run_interface() File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/pipeline/engine/nodes.py", line 476, in _run_interface self._result = self._run_command(execute) File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/pipeline/engine/nodes.py", line 607, in _run_command result = self._interface.run() File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/interfaces/base.py", line 1085, in run runtime = self._run_wrapper(runtime) File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/interfaces/base.py", line 1728, in _run_wrapper runtime = self._run_interface(runtime) File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/interfaces/base.py", line 1762, in run_interface self.raise_exception(runtime) File "/Shared/pinc/sharedopt/apps/anaconda3/Linux/x86_64/4.3.0/lib/python3.6/site-packages/nipype-0.13.0_gdd1ed4f.dev-py3.6.egg/nipype/interfaces/base.py", line 1686, in raise_exception **runtime.dictcopy())) RuntimeError: Command: BRAINSABC --atlasDefinition /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/ExtendedAtlasDefinition.xml --atlasToSubjectTransform atlas_to_subject.h5 --atlasToSubjectTransformType SyN --debuglevel 0 --filterIteration 3 --filterMethod None --inputVolumeTypes T1,T2 --inputVolumes /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/LandmarkInitialize/BROIAuto_cropped/Cropped_BCD_ACPC_Aligned.nii.gz --inputVolumes /Shared/hothlab/structural/MR/D006/64428017/ANONRAW/D006_64428017_T2_SAG_CROP.nii.gz --interpolationMode Linear --maxBiasDegree 0 --maxIterations 2 --outputDir ./ --outputDirtyLabels volume_label_seg.nii.gz --outputFormat NIFTI --outputLabels brain_label_seg.nii.gz --outputVolumes D006_64428017_T1_EYES_FIXED_corrected.nii.gz --outputVolumes D006_64428017_T2_SAG_CROP_corrected.nii.gz --posteriorTemplate POSTERIOR%s.nii.gz --purePlugsThreshold 0.100000 --restoreState /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/TissueClassify/AtlasToSubjectANTsPreABC_SyN/SavedInternalSyNState.h5 --saveState SavedBABCInternalSyNState.h5 --useKNN Standard output: FL /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t2_denoised_gaussian.nii.gz OTHER /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t1_denoised_gaussian.nii.gz PD /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t2_denoised_gaussian.nii.gz T1 /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t1_denoised_gaussian.nii.gz T2 /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t2_denoised_gaussian.nii.gz /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_brain.nii.gz /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_headregion.nii.gz AIR /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_AIR.nii.gz 1 1 0 0 0 FL 0 0.1 OTHER 0 0.1 PD 0 0.1 T1 0 0.1 T2 0 0.1 BASAL /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_BASAL.nii.gz 1 1 19 0 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.99 T1 0.01 0.99 T2 0.02 0.99 CRBLGM /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_CRBLGM.nii.gz 1 1 11 1 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.99 T1 0.01 0.99 T2 0.01 0.99 CRBLWM /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_CRBLWM.nii.gz 1 1 12 1 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.99 T1 0.05 1 T2 0.03 0.99 CSF /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_CSF.nii.gz 2.5 1 4 1 1 FL 0 0.95 OTHER 0 1 PD 0.05 1 T1 0 0.95 T2 0.05 1 GLOBUS /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_GLOBUS.nii.gz 1 1 23 0 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.99 T1 0.01 0.99 T2 0.01 0.99 HIPPOCAMPUS /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_HIPPOCAMPUS.nii.gz 1 1 25 0 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.98 T1 0.05 0.98 T2 0.05 0.97 NOTCSF /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_NOTCSF.nii.gz 1 1 6 0 0 FL 0 0.5 OTHER 0 1 PD 0 0.5 T1 0 0.6 T2 0.2 1 NOTGM /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_NOTGM.nii.gz 1 1 7 0 0 FL 0.1 0.99 OTHER 0 1 PD 0.35 1 T1 0.15 0.9 T2 0.35 1 NOTVB /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_NOTVB.nii.gz 1 1 9 0 0 FL 0 0.5 OTHER 0 1 PD 0 0.3 T1 0.15 0.9 T2 0 0.3 NOTWM /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_NOTWM.nii.gz 1 1 8 0 0 FL 0.01 0.99 OTHER 0 1 PD 0.5 1 T1 0.4 1 T2 0.1 0.85 SURFGM /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_SURFGM.nii.gz 2.5 1 2 1 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.99 T1 0.04 0.99 T2 0.01 0.98 THALAMUS /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_THALAMUS.nii.gz 1 1 24 0 1 FL 0.01 0.99 OTHER 0 1 PD 0.01 0.99 T1 0.01 0.99 T2 0.05 0.98 VB /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_VB.nii.gz 1 1 5 0 1 FL 0 0.9 OTHER 0 1 PD 0 0.5 T1 0.04 0.75 T2 0 0.2 WM /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/GENERATED_WM.nii.gz 1 1 1 1 1 FL 0.01 0.99 OTHER 0 1 PD 0 0.98 T1 0.1 1 T2 0.001 0.98 mu::brainseg

Program compiled on: Mar 19 2017

Hans J. Johnson - [email protected], has made significant edits to this front end of the BRAINSABC system. Original application was written by Marcel Prastawa - [email protected], and is maintained as a separate program. This software is provided for research purposes only

Using ITK version 4.12.0

=== Parameters === Suffix: BRAINSABC Output Directory: ./ Output Format: NIFTI Input images: Non-linear filtering, method: None, 3 iterations, dt = -1 Prior Names : [ AIR BASAL CRBLGM CRBLWM CSF GLOBUS HIPPOCAMPUS NOTCSF NOTGM NOTVB NOTWM SURFGM THALAMUS VB WM ] Prior weight scales : [ 1 1 1 1 2.5 1 1 1 1 1 1 2.5 1 1 1 ] Prior Label Codes : [ 0 19 11 12 4 23 25 6 7 9 8 2 24 5 1 ] Prior IsForeground : [ 0 1 1 1 1 1 1 0 0 0 0 1 1 1 1 ] Prior Clusters : [ 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 ] Prior For Bias : [ 0 0 1 1 1 0 0 0 0 0 0 1 0 0 1 ] T1 Lower : [ 0 0.01 0.01 0.05 0 0.01 0.05 0 0.15 0.15 0.4 0.04 0.01 0.04 0.1 ] T1 Upper : [ 0.1 0.99 0.99 1 0.95 0.99 0.98 0.6 0.9 0.9 1 0.99 0.99 0.75 1 ] T2 Lower : [ 0 0.02 0.01 0.03 0.05 0.01 0.05 0.2 0.35 0 0.1 0.01 0.05 0 0.001 ] T2 Upper : [ 0.1 0.99 0.99 0.99 1 0.99 0.97 1 1 0.3 0.85 0.98 0.98 0.2 0.98 ] Max bias polynomial degree: 0 Atlas warping: 1 Atlas warp spline grid size: 5 X 5 X 5

=== Start Registration === Reading mask : /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_brain.nii.gz...

***Reading image : /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/LandmarkInitialize/BROIAuto_cropped/Cropped_BCD_ACPC_Aligned.nii.gz... Standardizing Intensities: ... Quantile: [0.00173875,3941.14]; Pegged: [1,3891.2]. Mapping Window: [-1.01135,4148.62] to [0,4096]. done.

***Reading image : /Shared/hothlab/structural/MR/D006/64428017/ANONRAW/D006_64428017_T2_SAG_CROP.nii.gz... Standardizing Intensities: ... Quantile: [0.999401,254.146]; Pegged: [1,3891.2]. Mapping Window: [0.934328,267.473] to [0,4096]. done. Set Intrasubject original image list

***Reading atlas image T1: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t1_denoised_gaussian.nii.gz... Standardizing Intensities: ...Quantile: [1402.39,30992.7]; Pegged: [1,3891.2]. Mapping Window: [1394.79,32550.5] to [0,4096]. done.

***Reading atlas image T2: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/Atlas/template_t2_denoised_gaussian.nii.gz... Standardizing Intensities: ...Quantile: [9.67193,31028.4]; Pegged: [1,3891.2]. Mapping Window: [1.69836,32661.4] to [0,4096]. done. Read ITK transform from file: /Shared/hothlab/structural/MR/BAWEXPERIMENT_20180509/20180425_HOTH_base_CACHE/singleSession_D006_64428017/TissueClassify/AtlasToSubjectANTsPreABC_SyN/SavedInternalSyNState.h5 HACK: 0 CompositeTransform Registering and resampling images... Update Register Intra subject images Key image registered to itself with Identity transform. Generating MovingImage Mask (Intrasubject 1) ListSample TotalFrequency is 4600200 256 ValidHistogramsEntries, 4600200 TotalFrequency 0.01 ---> 1 0.99 ---> 3227 LowHigh Thresholds: [1082,-2147483648] Generating FixedImage Mask (Intrasubject) ListSample TotalFrequency is 8905680 4044 ValidHistogramsEntries, 8905680 TotalFrequency 0.01 ---> 1 0.99 ---> 3287 LowHigh Thresholds: [1406,-2147483648] Registering (Rigid) image 1 to first image. TranformTypes: Rigid(1 of 4).

TranformTypes: ScaleVersor3D(2 of 4).

TranformTypes: ScaleSkewVersor3D(3 of 4).

TranformTypes: Affine(4 of 4).

Initializing transform with useCenterOfHeadAlign maxSIDirection = 213.422 Computing Sampled Distance Computations

maxSIDirection = 95.5 Computing Sampled Distance Computations

Initializing transform with useCenterOfHeadAlign to VersorRigid3DTransform (0x250f100) RTTI typeinfo: itk::VersorRigid3DTransform Reference Count: 2 Modified Time: 1785769 Debug: Off Object Name: Observers: none Matrix: 0.994522 0.103956 -0.0109262 -0.104528 0.989074 -0.103956 1.73472e-18 0.104528 0.994522 Offset: [99.4615, 118.848, 134.52] Center: [-4.47501, 27.7475, -2.36087] Translation: [102.396, 119.258, 137.433] Inverse: 0.994522 -0.104528 1.73472e-18 0.103956 0.989074 0.104528 -0.0109262 -0.103956 0.994522 Singular: 0 Versor: [ 0.0522642, -0.00273905, -0.0522642, 0.997261 ]

===============================================

=============================== ITKv4 Registration: Starting Transform Estimations for Rigid(1 of 4).===============================

0 -0.189435 [ 0.0493573 -0.00265614 -0.0523096 102.247 119.141 137.497 ] 1 -0.190611 [ 0.0465462 -0.00243768 -0.0524829 102.1 119.017 137.553 ] 2 -0.191859 [ 0.0436066 -0.00244863 -0.0529481 101.955 118.894 137.613 ] 3 -0.192969 [ 0.0407729 -0.00227098 -0.0535561 101.809 118.771 137.673 ] 4 -0.194316 [ 0.0376286 -0.0026114 -0.0530894 101.674 118.64 137.741 ] 5 -0.195361 [ 0.0346117 -0.00339091 -0.0527224 101.533 118.514 137.804 ] 6 -0.196234 [ 0.0307135 -0.00414328 -0.0519728 101.405 118.379 137.879 ] 7 -0.197224 [ 0.027726 -0.00508256 -0.0506534 101.269 118.243 137.933 ] 8 -0.198288 [ 0.0243242 -0.00643068 -0.0491333 101.127 118.112 137.983 ] 9 -0.199662 [ 0.0210245 -0.00756479 -0.0478012 100.988 117.977 138.031 ] 10 -0.200856 [ 0.0181158 -0.00830568 -0.0470614 100.85 117.838 138.072 ] 11 -0.202181 [ 0.0148154 -0.00905003 -0.0458387 100.712 117.702 138.122 ] 12 -0.203032 [ 0.0117354 -0.0100867 -0.044028 100.58 117.567 138.187 ] 13 -0.204329 [ 0.0091578 -0.0113465 -0.0425144 100.449 117.439 138.267 ] 14 -0.205378 [ 0.00638946 -0.0129461 -0.0407921 100.32 117.318 138.36 ] 15 -0.20646 [ 0.00437756 -0.0143285 -0.0397668 100.189 117.191 138.441 ] 16 -0.207541 [ 0.00195498 -0.0158778 -0.0380534 100.058 117.07 138.531 ] 17 -0.208897 [ -0.000764556 -0.0170038 -0.0370029 99.925 116.952 138.623 ] 18 -0.209658 [ -0.00290067 -0.0178964 -0.0365211 99.7874 116.851 138.727 ] 19 -0.210342 [ -0.00465132 -0.0183569 -0.036325 99.6529 116.745 138.831 ] 20 -0.211105 [ -0.00571283 -0.0190963 -0.0360982 99.5148 116.638 138.928 ] 21 -0.212116 [ -0.00713912 -0.0197489 -0.035926 99.3793 116.535 139.033 ] 22 -0.212727 [ -0.00839201 -0.0209587 -0.0352101 99.253 116.417 139.133 ] 23 -0.213477 [ -0.00987762 -0.0223232 -0.0333943 99.1392 116.293 139.241 ] 24 -0.214409 [ -0.011245 -0.023404 -0.0314636 99.0411 116.159 139.353 ] 25 -0.215118 [ -0.0123384 -0.0252797 -0.0295278 98.9452 116.028 139.47 ] 26 -0.216058 [ -0.013438 -0.0273122 -0.0289951 98.851 115.889 139.578 ] 27 -0.216964 [ -0.0151621 -0.0290945 -0.0290726 98.7704 115.747 139.693 ] 28 -0.21764 [ -0.0169073 -0.030283 -0.0283276 98.6922 115.616 139.822 ] 29 -0.218417 [ -0.0174125 -0.0310951 -0.0283286 98.5988 115.486 139.943 ] 30 -0.219295 [ -0.0176851 -0.0318311 -0.0283382 98.5015 115.354 140.057 ] 31 -0.220025 [ -0.0196754 -0.0325107 -0.0283228 98.4155 115.227 140.186 ] 32 -0.220894 [ -0.0207922 -0.0335557 -0.0287753 98.3375 115.094 140.313 ] 33 -0.221835 [ -0.0225056 -0.0342935 -0.0280724 98.2802 114.955 140.445 ] 34 -0.222633 [ -0.0232566 -0.0366103 -0.0259668 98.2289 114.826 140.588 ] 35 -0.224281 [ -0.0234448 -0.038678 -0.0248898 98.1512 114.694 140.717 ] 36 -0.225014 [ -0.0206681 -0.0397057 -0.0253452 98.0462 114.565 140.828 ] 37 -0.226001 [ -0.0207475 -0.0405092 -0.0244274 97.9681 114.424 140.946 ] 38 -0.226624 [ -0.0178044 -0.0415123 -0.0235217 97.8729 114.285 141.053 ] 39 -0.227535 [ -0.0171958 -0.0421265 -0.0257014 97.7517 114.141 141.121 ] 40 -0.228357 [ -0.0185533 -0.0434641 -0.0256285 97.6699 113.979 141.205 ] 41 -0.229019 [ -0.0184107 -0.0452228 -0.0250978 97.5616 113.832 141.287 ] 42 -0.229593 [ -0.0196387 -0.0463542 -0.0246457 97.4724 113.665 141.35 ] 43 -0.230436 [ -0.0202991 -0.0486601 -0.0252744 97.4019 113.526 141.476 ] 44 -0.231323 [ -0.0199174 -0.0504733 -0.0211921 97.2999 113.41 141.603 ] 45 -0.231768 [ -0.0101812 -0.0448587 -0.0289401 97.1978 113.251 141.544 ] 46 -0.231008 [ -0.0176252 -0.0466596 -0.0268868 97.2065 113.053 141.56 ] 47 -0.232089 [ 0.000376869 -0.0587532 -0.021241 97.3876 112.982 141.573 ] 48 -0.23148 [ -0.00187324 -0.0563406 -0.0231568 97.3246 112.912 141.541 ] 49 -0.23263 [ -0.00373667 -0.0544432 -0.0247584 97.2803 112.829 141.507 ] 50 -0.233072 [ -0.00562073 -0.0525885 -0.02533 97.233 112.743 141.488 ] 51 -0.233461 [ -0.00677395 -0.051201 -0.0258945 97.2091 112.647 141.479 ] 52 -0.233656 [ -0.00938664 -0.0521502 -0.0257307 97.2079 112.549 141.503 ] 53 -0.233942 [ -0.00938082 -0.0530489 -0.0256064 97.1997 112.564 141.55 ] 54 -0.234097 [ -0.0102067 -0.0544846 -0.0260527 97.1944 112.571 141.599 ] 55 -0.234219 [ -0.011079 -0.0549281 -0.0283516 97.164 112.584 141.636 ] 56 -0.234304 [ -0.0104016 -0.0542845 -0.0276475 97.1317 112.621 141.644 ] 57 -0.23407 [ -0.0133247 -0.0556959 -0.0279032 97.0904 112.604 141.665 ] 58 -0.234189 [ -0.0120556 -0.0551613 -0.0278014 97.0843 112.628 141.661 ] 59 -0.234136 [ -0.0101246 -0.0544464 -0.0282355 97.0777 112.643 141.642 ] 60 -0.234037 [ -0.0106583 -0.0549293 -0.0278229 97.0806 112.631 141.64 ] 61 -0.234084 [ -0.0101156 -0.0548995 -0.0279586 97.0894 112.623 141.637 ] 62 -0.234199 [ -0.010962 -0.055164 -0.0278417 97.0885 112.611 141.641 ] 63 -0.234174 [ -0.0104403 -0.0547076 -0.0278033 97.0882 112.617 141.639 ] 64 -0.234121 [ -0.010498 -0.0549033 -0.0278028 97.0887 112.614 141.64 ] 65 -0.234143 [ -0.0102629 -0.0550266 -0.0279581 97.0866 112.612 141.638 ] 66 -0.234228 [ -0.0104857 -0.0550716 -0.027848 97.0865 112.609 141.639 ] 67 -0.234193 [ -0.0103813 -0.0550445 -0.0278947 97.0855 112.609 141.638 ] 68 -0.234193 [ -0.0104198 -0.0550457 -0.0278647 97.0851 112.608 141.637 ] 69 -0.234186 [ -0.010384 -0.0550408 -0.0278722 97.0842 112.607 141.637 ] 70 -0.234208 [ -0.0104079 -0.055044 -0.0278573 97.0836 112.605 141.636 ] 71 -0.234214 [ -0.0103734 -0.0550366 -0.0278693 97.0826 112.604 141.636 ] 72 -0.23423 [ -0.0104019 -0.0550407 -0.027853 97.0821 112.603 141.636 ] 73 -0.234224 [ -0.0103623 -0.0550359 -0.0278657 97.0812 112.602 141.635 ] 74 -0.234231 [ -0.0104048 -0.0550412 -0.0278443 97.0806 112.6 141.635 ] 75 -0.234223 [ -0.0103372 -0.0550345 -0.0278624 97.0795 112.6 141.634 ] 76 -0.234244 [ -0.0104165 -0.0550412 -0.0278356 97.079 112.598 141.635 ] 77 -0.234234 [ -0.0103119 -0.0550375 -0.0278565 97.0779 112.598 141.634 ] 78 -0.234252 [ -0.0103649 -0.0550415 -0.0278418 97.0777 112.597 141.634 ] 79 -0.23425 [ -0.0103823 -0.0550403 -0.0278331 97.0772 112.597 141.634 ] 80 -0.234228 [ -0.0103662 -0.055041 -0.0278313 97.0766 112.596 141.634 ] 81 -0.234228 [ -0.0103765 -0.0550411 -0.0278279 97.076 112.596 141.634 ] 82 -0.234246 [ -0.0103655 -0.0550397 -0.0278283 97.0754 112.595 141.633 ] 83 -0.234237 [ -0.0103731 -0.0550378 -0.0278238 97.0748 112.595 141.634 ] 84 -0.234243 [ -0.0103587 -0.055037 -0.0278214 97.0741 112.595 141.633 ] 85 -0.234257 [ -0.0103766 -0.0550389 -0.0278189 97.0735 112.594 141.634 ] 86 -0.234245 [ -0.0103399 -0.0550399 -0.0278221 97.0729 112.594 141.633 ] 87 -0.234244 [ -0.0103771 -0.0550415 -0.0278168 97.0726 112.593 141.634 ] 88 -0.234236 [ -0.0103217 -0.05504 -0.0278281 97.072 112.593 141.633 ] 89 -0.234268 [ -0.0103769 -0.0550435 -0.0278116 97.0718 112.592 141.634 ] 90 -0.234238 [ -0.0103361 -0.0550459 -0.0278112 97.0716 112.592 141.633 ] 91 -0.234256 [ -0.0103472 -0.055044 -0.0278135 97.0715 112.592 141.634 ] 92 -0.234255 [ -0.0103548 -0.0550421 -0.0278161 97.0714 112.592 141.634 ] 93 -0.234258 [ -0.0103571 -0.0550406 -0.0278167 97.0713 112.592 141.634 ] 94 -0.234255 [ -0.0103574 -0.0550388 -0.0278168 97.0711 112.592 141.634 ] 95 -0.234255 [ -0.0103572 -0.0550374 -0.0278162 97.071 112.592 141.634 ] 96 -0.234253 [ -0.010357 -0.0550363 -0.0278156 97.0708 112.592 141.634 ] 97 -0.234257 [ -0.0103565 -0.0550355 -0.0278149 97.0707 112.591 141.634 ] 98 -0.234257 [ -0.0103562 -0.0550349 -0.0278143 97.0705 112.591 141.634 ] 99 -0.234252 [ -0.0103561 -0.0550345 -0.0278138 97.0704 112.591 141.634 ] 100 -0.234252 [ -0.0103557 -0.0550341 -0.0278133 97.0702 112.591 141.633 ] 101 -0.234257 [ -0.010351 -0.0550334 -0.027813 97.0701 112.591 141.633 ] 102 -0.234246 [ -0.010356 -0.0550318 -0.0278122 97.07 112.591 141.634 ] 103 -0.234251 [ -0.0103428 -0.0550383 -0.0277925 97.0699 112.591 141.633 ] 104 -0.234243 [ -0.0103464 -0.0550354 -0.0278058 97.0697 112.591 141.634 ] 105 -0.234247 [ -0.0103509 -0.0550345 -0.0278104 97.0696 112.59 141.634 ] 106 -0.234254 [ -0.010346 -0.0550386 -0.0277954 97.0695 112.59 141.634 ] 107 -0.23425 [ -0.0103465 -0.0550352 -0.0278091 97.0693 112.59 141.634 ] 108 -0.234241 [ -0.010352 -0.055034 -0.0278098 97.0692 112.59 141.634 ] 109 -0.234256 [ -0.0103413 -0.0550396 -0.0277868 97.0691 112.59 141.633 ] 110 -0.234257 [ -0.0103447 -0.0550351 -0.0278054 97.0689 112.59 141.634 ] 111 -0.234248 [ -0.0103516 -0.0550334 -0.0278097 97.0688 112.59 141.634 ] 112 -0.234259 [ -0.0103447 -0.0550385 -0.0277948 97.0688 112.59 141.634 ] Stop condition from optimizer.RegularStepGradientDescentOptimizerv4: Step too small after 113 iterations. Current step (4.88281e-05) is less than minimum step (5e-05).

=============================== ITKv4 Registration: Starting Transform Estimations for ScaleVersor3D(2 of 4).===============================

0 -0.23407 [ -0.0132371 -0.0556536 -0.0278955 97.0916 112.605 141.664 0.850222 0.877261 1.01223 ] 1 -0.215285 [ -0.0157778 -0.0558926 -0.0246652 97.1563 112.537 141.63 0.84218 0.87544 1.0104 ] 2 -0.2244 [ -0.0170586 -0.0564634 -0.0229537 97.2396 112.484 141.618 0.839682 0.872542 1.00876 ] 3 -0.230423 [ -0.0179691 -0.0568007 -0.0219046 97.3211 112.428 141.603 0.837417 0.8688 1.00686 ] 4 -0.237437 [ -0.0189308 -0.0569982 -0.021212 97.3992 112.368 141.585 0.835403 0.864916 1.00493 ] 5 -0.245153 [ -0.0199824 -0.0570507 -0.0208667 97.4751 112.306 141.568 0.833493 0.860738 1.00303 ] 6 -0.253828 [ -0.0210398 -0.0570698 -0.0204585 97.5525 112.246 141.548 0.831982 0.856857 1.001 ] 7 -0.263063 [ -0.022148 -0.0571249 -0.0201314 97.6326 112.19 141.527 0.830603 0.853115 0.998801 ] 8 -0.272535 [ -0.0235145 -0.0571041 -0.020182 97.713 112.135 141.506 0.829635 0.849846 0.996343 ] 9 -0.282047 [ -0.024919 -0.0570187 -0.0204542 97.7953 112.082 141.485 0.828799 0.846824 0.993696 ] 10 -0.291436 [ -0.0264703 -0.0568851 -0.0209563 97.8782 112.03 141.465 0.82815 0.843715 0.990983 ] 11 -0.301278 [ -0.028208 -0.0568419 -0.0216234 97.9612 111.978 141.446 0.827732 0.841228 0.988236 ] 12 -0.310826 [ -0.0301722 -0.0569145 -0.0222276 98.0472 111.93 141.43 0.827342 0.839491 0.985362 ] 13 -0.320212 [ -0.0322773 -0.057024 -0.022975 98.1339 111.882 141.417 0.826918 0.838043 0.982448 ] 14 -0.329983 [ -0.0346664 -0.0570669 -0.023714 98.2242 111.84 141.407 0.826648 0.837199 0.9793 ] 15 -0.339727 [ -0.0374192 -0.0570642 -0.0245523 98.3167 111.804 141.4 0.826733 0.83691 0.975626 ] 16 -0.350291 [ -0.0400998 -0.0570077 -0.0251722 98.4125 111.777 141.393 0.827019 0.837044 0.971608 ] 17 -0.360531 [ -0.0435843 -0.0568676 -0.0255498 98.5096 111.755 141.388 0.827224 0.83722 0.966722 ] 18 -0.373086 [ -0.0477198 -0.0564566 -0.025957 98.6088 111.75 141.383 0.8276 0.836846 0.96065 ] 19 -0.387419 [ -0.0520366 -0.0557351 -0.0261309 98.7057 111.771 141.383 0.828636 0.836948 0.95339 ] 20 -0.402015 [ -0.0561 -0.0550417 -0.0259816 98.7885 111.825 141.397 0.829363 0.836762 0.946125 ] 21 -0.414857 [ -0.0590794 -0.0544889 -0.0252551 98.8459 111.899 141.43 0.830034 0.83642 0.940872 ] 22 -0.423492 [ -0.0609667 -0.0540735 -0.0248423 98.8846 111.979 141.475 0.830322 0.83637 0.937448 ] 23 -0.428676 [ -0.062517 -0.0536618 -0.0248701 98.9128 112.058 141.53 0.830504 0.836341 0.934989 ] 24 -0.433111 [ -0.064099 -0.0531944 -0.0249386 98.9371 112.134 141.591 0.830538 0.835981 0.933111 ] 25 -0.437137 [ -0.0655478 -0.0527526 -0.0249236 98.9576 112.207 141.655 0.830531 0.835654 0.931636 ] 26 -0.440871 [ -0.066728 -0.0522638 -0.0248357 98.9739 112.281 141.72 0.830468 0.83502 0.930451 ] 27 -0.444305 [ -0.0677981 -0.0517891 -0.024593 98.9876 112.353 141.788 0.83049 0.834367 0.929491 ] 28 -0.447521 [ -0.0689477 -0.0514071 -0.0243034 98.9979 112.424 141.858 0.830497 0.833765 0.928584 ] 29 -0.450674 [ -0.0701484 -0.0509262 -0.0240821 99.0057 112.493 141.93 0.830424 0.833268 0.927559 ] 30 -0.453821 [ -0.0711402 -0.0504714 -0.0239719 99.0105 112.562 142.002 0.830274 0.832762 0.926528 ] 31 -0.45686 [ -0.0720877 -0.0499715 -0.0241953 99.0128 112.63 142.076 0.830231 0.832345 0.925526 ] 32 -0.459788 [ -0.0728898 -0.0494774 -0.0241904 99.0192 112.695 142.151 0.830039 0.832101 0.924526 ] 33 -0.462573 [ -0.0736101 -0.0490121 -0.024146 99.0264 112.758 142.229 0.829749 0.831657 0.92354 ] 34 -0.465251 [ -0.0745304 -0.0486332 -0.024173 99.0324 112.816 142.31 0.829674 0.831646 0.92252 ] 35 -0.467875 [ -0.0752728 -0.0482332 -0.0241805 99.0392 112.876 142.389 0.829146 0.830761 0.921199 ] 36 -0.470646 [ -0.0762598 -0.0478524 -0.0241239 99.0432 112.925 142.476 0.82932 0.831111 0.920302 ] 37 -0.473424 [ -0.0768946 -0.047435 -0.0241816 99.0467 112.983 142.558 0.82845 0.829838 0.918795 ] 38 -0.476283 [ -0.0779036 -0.0470704 -0.0241129 99.0492 113.025 142.649 0.829068 0.83072 0.917997 ] 39 -0.478932 [ -0.0781829 -0.0465621 -0.0241759 99.053 113.082 142.73 0.827615 0.828567 0.91618 ] 40 -0.481578 [ -0.0792072 -0.0463148 -0.0242104 99.0505 113.115 142.825 0.82889 0.830457 0.915711 ] 41 -0.484042 [ -0.0793416 -0.0460065 -0.0240715 99.0536 113.175 142.905 0.826699 0.82719 0.913546 ] 42 -0.486286 [ -0.0806009 -0.0459145 -0.0241666 99.0498 113.199 143.001 0.828666 0.829988 0.913296 ] 43 -0.489273 [ -0.0802773 -0.0455565 -0.0238947 99.0524 113.262 143.079 0.825677 0.825661 0.910851 ] 44 -0.490247 [ -0.0815637 -0.0454749 -0.0240956 99.0454 113.28 143.177 0.828305 0.829447 0.910876 ] 45 -0.494474 [ -0.0810238 -0.0451539 -0.0238265 99.0469 113.339 143.258 0.824988 0.824842 0.908288 ] 46 -0.494951 [ -0.0824073 -0.0451601 -0.0238114 99.0413 113.353 143.356 0.827884 0.829027 0.908327 ] 47 -0.499554 [ -0.0817649 -0.044836 -0.0235415 99.0394 113.411 143.437 0.824215 0.823806 0.905574 ] 48 -0.498931 [ -0.0830776 -0.0449054 -0.0236631 99.033 113.42 143.537 0.827415 0.828367 0.905773 ] 49 -0.504995 [ -0.0823839 -0.0445682 -0.0234653 99.0304 113.475 143.62 0.823817 0.823415 0.903 ] 50 -0.504553 [ -0.0835965 -0.0446531 -0.0237672 99.024 113.486 143.719 0.827018 0.827723 0.903154 ] 51 -0.510467 [ -0.0828796 -0.0443323 -0.0236989 99.0217 113.539 143.803 0.823685 0.82296 0.900482 ] 52 -0.510419 [ -0.0840714 -0.0444103 -0.0238666 99.0186 113.55 143.903 0.826662 0.827101 0.900538 ] 53 -0.516144 [ -0.0832909 -0.0441368 -0.0237434 99.0169 113.603 143.987 0.823473 0.82238 0.897842 ] 54 -0.516025 [ -0.0845275 -0.0441776 -0.0239562 99.0126 113.613 144.087 0.82634 0.826662 0.897856 ] 55 -0.521707 [ -0.0834887 -0.0439176 -0.0237357 99.0121 113.666 144.171 0.822892 0.821436 0.895128 ] 56 -0.520403 [ -0.0847993 -0.0439546 -0.0240409 99.0056 113.671 144.271 0.826048 0.826385 0.895259 ] 57 -0.527267 [ -0.0835847 -0.0436012 -0.0236777 99.004 113.723 144.356 0.822211 0.820487 0.89236 ] 58 -0.524122 [ -0.0850679 -0.0437031 -0.0241142 98.9982 113.724 144.455 0.825678 0.825823 0.892573 ] 59 -0.533123 [ -0.0837311 -0.0433795 -0.0236938 98.9968 113.774 144.542 0.821869 0.820172 0.889726 ] 60 -0.530277 [ -0.0851749 -0.0434865 -0.0240484 98.992 113.774 144.641 0.825367 0.825456 0.88986 ] 61 -0.539176 [ -0.0838482 -0.0430911 -0.0237103 98.9899 113.824 144.728 0.821229 0.81946 0.886849 ] 62 -0.534898 [ -0.085318 -0.0431788 -0.0240848 98.9858 113.822 144.828 0.824958 0.824915 0.887086 ] 63 -0.545638 [ -0.0836982 -0.0427433 -0.0238621 98.985 113.871 144.914 0.82103 0.819028 0.884174 ] 64 -0.5409 [ -0.085099 -0.0427792 -0.0242177 98.9811 113.869 145.014 0.824765 0.824471 0.884436 ] 65 -0.551937 [ -0.0832264 -0.0423194 -0.0238565 98.9822 113.917 145.102 0.820539 0.818359 0.881431 ] 66 -0.545042 [ -0.0847532 -0.042363 -0.0242121 98.977 113.912 145.201 0.824481 0.824102 0.881775 ] 67 -0.558159 [ -0.0829923 -0.0420562 -0.0237021 98.9788 113.956 145.29 0.820229 0.818021 0.878666 ] 68 -0.551081 [ -0.0844867 -0.0420667 -0.0241389 98.9705 113.95 145.39 0.824284 0.823845 0.879038 ] 69 -0.564535 [ -0.0824897 -0.0417719 -0.023726 98.97 113.995 145.478 0.819747 0.817481 0.875792 ] 70 -0.555868 [ -0.0840428 -0.041742 -0.0241811 98.9609 113.986 145.577 0.823978 0.823393 0.876225 ] 71 -0.571603 [ -0.0821417 -0.0415397 -0.023673 98.9602 114.027 145.668 0.819705 0.817568 0.873007 ] 72 -0.564219 [ -0.0836508 -0.0414901 -0.0241273 98.9509 114.017 145.767 0.823788 0.823312 0.873404 ] 73 -0.578295 [ -0.0813175 -0.0411349 -0.0236204 98.9489 114.06 145.857 0.818971 0.816543 0.87002 ] 74 -0.566281 [ -0.0830096 -0.0411361 -0.0240589 98.9411 114.047 145.955 0.823375 0.822581 0.870634 ] 75 -0.586285 [ -0.0812535 -0.0406667 -0.0238914 98.9374 114.08 146.049 0.819557 0.817745 0.86751 ] 76 -0.581322 [ -0.0826882 -0.0407346 -0.0241293 98.9324 114.068 146.148 0.823323 0.823064 0.867795 ] 77 -0.592549 [ -0.0797491 -0.0404212 -0.0236269 98.9325 114.114 146.236 0.817832 0.8152 0.864154 ] 78 -0.573316 [ -0.0816027 -0.0405094 -0.0240924 98.927 114.098 146.334 0.82256 0.821442 0.864959 ] 79 -0.602536 [ -0.0804796 -0.0402872 -0.0240364 98.9251 114.115 146.433 0.820389 0.819358 0.862386 ] 80 -0.604724 [ -0.0812805 -0.0403003 -0.024215 98.9229 114.104 146.532 0.822667 0.822515 0.861959 ] 81 -0.608897 [ -0.0782176 -0.0400774 -0.0237242 98.9235 114.145 146.623 0.817648 0.815346 0.858449 ] 82 -0.590797 [ -0.0800522 -0.0401098 -0.0242075 98.9157 114.125 146.72 0.822256 0.821376 0.859352 ] 83 -0.61886 [ -0.0784916 -0.0398333 -0.0239457 98.9136 114.138 146.819 0.8192 0.818198 0.85641 ] 84 -0.617752 [ -0.0796376 -0.0397917 -0.0242703 98.9077 114.12 146.917 0.822338 0.822491 0.856569 ] 85 -0.624952 [ -0.0755565 -0.0394268 -0.0233584 98.9096 114.162 147.007 0.815754 0.813261 0.852413 ] 86 -0.586467 [ -0.077614 -0.0395443 -0.0239491 98.9017 114.139 147.104 0.821194 0.819684 0.853807 ] 87 -0.636655 [ -0.0778643 -0.0392709 -0.0241814 98.8921 114.121 147.202 0.821062 0.821159 0.852098 ] 88 -0.641347 [ -0.0759747 -0.0391443 -0.0237335 98.892 114.132 147.301 0.81945 0.818193 0.849827 ] 89 -0.642268 [ -0.0770659 -0.0390743 -0.0241566 98.8835 114.109 147.398 0.822039 0.822161 0.849882 ] 90 -0.647147 [ -0.0721876 -0.0386836 -0.0229483 98.8847 114.145 147.489 0.813066 0.810896 0.844578 ] 91 -0.573088 [ -0.0743353 -0.0389128 -0.0235207 98.8765 114.123 147.586 0.819565 0.81785 0.846632 ] 92 -0.655826 [ -0.0755749 -0.038702 -0.024113 98.8661 114.092 147.68 0.821804 0.821963 0.846286 ] 93 -0.660478 [ -0.0697144 -0.0382477 -0.0227409 98.8713 114.133 147.768 0.810951 0.808777 0.839776 ] 94 -0.550745 [ -0.0718722 -0.0385435 -0.0232601 98.864 114.112 147.865 0.81805 0.815829 0.842158 ] 95 -0.656299 [ -0.0737499 -0.0384633 -0.0239856 98.8524 114.076 147.957 0.821785 0.8214 0.842727 ] 96 -0.67538 [ -0.0684222 -0.0378284 -0.0229204 98.8506 114.095 148.052 0.808328 0.808625 0.834613 ] 97 -0.539727 [ -0.0705011 -0.0381869 -0.0233576 98.8426 114.074 148.149 0.816191 0.815892 0.837372 ] 98 -0.664513 [ -0.0721376 -0.0381836 -0.0238874 98.8332 114.042 148.242 0.82129 0.821423 0.838663 ] 99 -0.690558 [ -0.0658641 -0.0374075 -0.0226372 98.8321 114.069 148.335 0.807702 0.807285 0.830195 ] 100 -0.529793 [ -0.0679547 -0.0377651 -0.0231212 98.8242 114.047 148.432 0.815756 0.814636 0.83317 ] 101 -0.665808 [ -0.0700669 -0.0378505 -0.0236667 98.8144 114.011 148.524 0.82112 0.820717 0.834647 ] 102 -0.708309 [ -0.0667187 -0.0373585 -0.0230424 98.805 114 148.622 0.810306 0.812101 0.827799 ] 103 -0.609499 [ -0.0685793 -0.0376816 -0.0234284 98.798 113.973 148.717 0.818361 0.819468 0.830586 ] 104 -0.721097 [ -0.0684998 -0.0374551 -0.0237742 98.7892 113.948 148.814 0.821372 0.820475 0.830618 ] 105 -0.722804 [ -0.0623571 -0.0375619 -0.0208859 98.8083 113.953 148.907 0.802059 0.806385 0.821185 ] 106 -0.490436 [ -0.0648012 -0.037793 -0.0221122 98.7976 113.934 149.004 0.811498 0.814737 0.824997 ] 107 -0.659888 [ -0.0670059 -0.0376652 -0.0233267 98.7791 113.901 149.095 0.8202 0.82176 0.827594 ] 108 -0.732714 [ -0.0616399 -0.0359938 -0.0233147 98.7574 113.934 149.075 0.810309 0.807387 0.819812 ] 109 -0.569341 [ -0.0623856 -0.0361909 -0.0233314 98.7569 113.928 149.099 0.812556 0.809546 0.820715 ] 110 -0.614332 [ -0.063127 -0.0363757 -0.0233336 98.7567 113.921 149.123 0.814638 0.811629 0.821525 ] 111 -0.65784 [ -0.0638352 -0.036544 -0.0233417 98.7565 113.912 149.146 0.816491 0.813618 0.822247 ] 112 -0.695827 [ -0.0645069 -0.0366943 -0.0233578 98.7562 113.903 149.169 0.81804 0.815432 0.822874 ] 113 -0.723787 [ -0.0650955 -0.0368196 -0.0233627 98.7559 113.892 149.191 0.819183 0.816985 0.823411 ] 114 -0.739371 [ -0.0655497 -0.0369322 -0.0233522 98.7567 113.881 149.214 0.819788 0.818164 0.823806 ] 115 -0.74538 [ -0.0657336 -0.0370361 -0.0233027 98.7584 113.87 149.236 0.819737 0.818793 0.823972 ] 116 -0.746792 [ -0.0655705 -0.0370916 -0.0232783 98.7596 113.86 149.259 0.819307 0.818801 0.823868 ] 117 -0.747468 [ -0.0654753 -0.0370631 -0.0233154 98.7589 113.85 149.282 0.819374 0.818893 0.823743 ] 118 -0.748178 [ -0.0652779 -0.0370417 -0.0232801 98.7589 113.84 149.305 0.819203 0.818718 0.823439 ] 119 -0.748843 [ -0.0652102 -0.0370092 -0.0232852 98.7579 113.829 149.327 0.819368 0.818831 0.82326 ] 120 -0.749533 [ -0.0649428 -0.0369858 -0.0232383 98.7573 113.819 149.35 0.819073 0.818514 0.822864 ] 121 -0.749956 [ -0.0649994 -0.0369515 -0.0232772 98.7553 113.809 149.373 0.819505 0.818878 0.822804 ] 122 -0.750588 [ -0.0643714 -0.0369487 -0.0231139 98.7561 113.8 149.396 0.818272 0.817691 0.821944 ] 123 -0.748249 [ -0.0648534 -0.0369111 -0.0232753 98.7522 113.79 149.419 0.819744 0.819034 0.822384 ] 124 -0.75109 [ -0.0613573 -0.0370337 -0.0223554 98.7643 113.793 149.435 0.811318 0.811082 0.818176 ] 125 -0.632998 [ -0.0623218 -0.0371006 -0.0226117 98.7609 113.785 149.458 0.813976 0.813585 0.81922 ] 126 -0.688899 [ -0.0632424 -0.0371275 -0.0228625 98.7565 113.776 149.481 0.816532 0.815981 0.820193 ] 127 -0.732717 [ -0.064078 -0.0370599 -0.0231393 98.7501 113.766 149.502 0.818968 0.818246 0.82107 ] 128 -0.752128 [ -0.0645903 -0.036592 -0.0234957 98.7381 113.754 149.521 0.820072 0.819219 0.821178 ] 129 -0.750372 [ -0.0640149 -0.0368014 -0.0231055 98.7452 113.76 149.513 0.818816 0.818011 0.820798 ] 130 -0.751924 [ -0.0641592 -0.0368197 -0.0231625 98.7446 113.758 149.518 0.819244 0.818431 0.820951 ] 131 -0.75253 [ -0.0638595 -0.0369472 -0.0231393 98.7466 113.756 149.524 0.818734 0.817946 0.820692 ] 132 -0.751688 [ -0.0640684 -0.0368975 -0.023201 98.7448 113.753 149.529 0.819221 0.818422 0.820838 ] 133 -0.752553 [ -0.0637298 -0.036653 -0.0229567 98.7416 113.751 149.534 0.818244 0.817371 0.820169 ] 134 -0.749396 [ -0.0639245 -0.0366958 -0.0230381 98.7411 113.749 149.539 0.81885 0.817969 0.820428 ] 135 -0.752007 [ -0.0640827 -0.0367801 -0.0231441 98.7414 113.747 149.545 0.81939 0.818519 0.820689 ] Stop condition from optimizer.RegularStepGradientDescentOptimizerv4: Step too small after 136 iterations. Current step (0.003125) is less than minimum step (0.005).

=============================== ITKv4 Registration: Starting Transform Estimations for ScaleSkewVersor3D(3 of 4).===============================

0 -0.749396 [ -0.0699236 -0.0380161 -0.0255482 98.7255 113.678 149.715 0.837519 0.836403 0.828426 0.014233 0.00462729 0.0109514 0.00793605 0.00626032 -0.000711553 ] 1 -0.448588 [ -0.0665804 -0.037352 -0.0231338 98.7434 113.659 149.621 0.824999 0.824863 0.823617 0.0115836 0.00464881 0.0117352 0.00465849 0.0045001 0.00166847 ] 2 -0.59885 [ -0.0631091 -0.0373506 -0.0176758 98.7378 113.695 149.53 0.818414 0.816778 0.819617 -0.000266535 0.00202096 0.00564277 0.00291101 0.00250711 0.00448201 ] 3 -0.700201 [ -0.0651743 -0.0369553 -0.0215121 98.7006 113.675 149.554 0.820405 0.819792 0.820409 0.00329358 0.00174588 0.00505862 0.0020948 0.0017419 0.00103468 ] 4 -0.73897 [ -0.0638719 -0.0373762 -0.020967 98.7078 113.693 149.539 0.818622 0.817837 0.820123 0.00099666 0.00102913 0.0033561 0.00162987 0.0015437 0.00203763 ] 5 -0.748601 [ -0.0643718 -0.0372757 -0.0219581 98.6991 113.69 149.547 0.819344 0.818669 0.820425 0.00166567 0.00096147 0.00293704 0.00141935 0.00141095 0.00114051 ] 6 -0.753874 [ -0.0641231 -0.0373328 -0.0220007 98.7004 113.696 149.545 0.819066 0.818346 0.82042 0.0012261 0.000805506 0.00245321 0.00127571 0.00134203 0.00124983 ] 7 -0.754646 [ -0.0641903 -0.0372612 -0.022501 98.6985 113.701 149.548 0.819214 0.81847 0.820542 0.00117411 0.000688279 0.00185718 0.00106688 0.00119834 0.000889539 ] 8 -0.755139 [ -0.06403 -0.0372837 -0.0223761 98.7017 113.706 149.546 0.819018 0.81824 0.820498 0.000896122 0.00063213 0.00171604 0.00103834 0.00117416 0.00104606 ] 9 -0.755125 [ -0.0643612 -0.0371419 -0.0228292 98.7019 113.71 149.551 0.819397 0.818662 0.820611 0.00136849 0.000689779 0.0017005 0.00101175 0.00108847 0.000612102 ] 10 -0.754237 [ -0.064132 -0.0372109 -0.0225321 98.7057 113.714 149.548 0.819118 0.81834 0.820534 0.000961734 0.000619495 0.00161254 0.00100927 0.00109868 0.00088579 ] 11 -0.755327 [ -0.0640754 -0.0372044 -0.0225032 98.7089 113.719 149.548 0.819044 0.818259 0.820511 0.000937519 0.000609971 0.00162278 0.00100227 0.00107523 0.000949168 ] 12 -0.75523 [ -0.0644652 -0.0371235 -0.0226931 98.7106 113.722 149.553 0.819458 0.818767 0.820613 0.00118192 0.000645177 0.00163831 0.00100954 0.00106052 0.000485518 ] Stop condition from optimizer.RegularStepGradientDescentOptimizerv4: Step too small after 13 iterations. Current step (0.003125) is less than minimum step (0.005).

=============================== ITKv4 Registration: Starting Transform Estimations for Affine(4 of 4).===============================

0 -0.75523 [ 0.815371 0.0506182 -0.0706815 -0.0384767 0.809121 0.130445 0.0781406 -0.125221 0.809561 98.7137 113.728 149.562 ] 1 -0.755283 [ 0.815387 0.0506279 -0.0706782 -0.0384754 0.809137 0.130445 0.0781371 -0.125239 0.809559 98.7145 113.73 149.564 ] 2 -0.755289 [ 0.815377 0.0506325 -0.0706752 -0.0384745 0.809136 0.130443 0.078131 -0.125245 0.809543 98.7143 113.731 149.561 ] 3 -0.755303 [ 0.815371 0.0506333 -0.0706743 -0.0384743 0.809134 0.130443 0.0781286 -0.125246 0.809537 98.7141 113.731 149.56 ] 4 -0.755309 [ 0.815367 0.0506338 -0.0706737 -0.0384743 0.809133 0.130443 0.0781272 -0.125247 0.809533 98.714 113.731 149.559 ] 5 -0.755302 [ 0.815365 0.0506342 -0.0706733 -0.0384743 0.809132 0.130443 0.0781262 -0.125248 0.809531 98.7139 113.731 149.559 ] 6 -0.755298 [ 0.815361 0.0506348 -0.0706727 -0.0384743 0.809131 0.130442 0.0781246 -0.125249 0.809527 98.7138 113.731 149.558 ] 7 -0.755295 [ 0.815357 0.0506354 -0.070672 -0.0384743 0.80913 0.130442 0.078123 -0.12525 0.809523 98.7137 113.731 149.557 ] 8 -0.755303 [ 0.815352 0.0506363 -0.0706711 -0.0384744 0.809129 0.130442 0.0781206 -0.125253 0.809517 98.7136 113.731 149.556 ] 9 -0.755304 [ 0.815349 0.050637 -0.0706704 -0.0384745 0.809128 0.130442 0.0781189 -0.125254 0.809514 98.7135 113.731 149.556 ] 10 -0.755308 [ 0.815346 0.0506376 -0.0706698 -0.0384747 0.809128 0.130442 0.0781176 -0.125256 0.809511 98.7135 113.731 149.555 ] 11 -0.755308 [ 0.815345 0.0506378 -0.0706696 -0.0384747 0.809128 0.130442 0.078117 -0.125257 0.80951 98.7134 113.731 149.555 ] 12 -0.755306 [ 0.815344 0.0506381 -0.0706694 -0.0384748 0.809128 0.130442 0.0781164 -0.125257 0.809508 98.7134 113.731 149.555 ] 13 -0.7553 [ 0.815343 0.0506385 -0.070669 -0.0384749 0.809127 0.130442 0.0781156 -0.125258 0.809507 98.7134 113.731 149.555 ] 14 -0.755299 [ 0.81534 0.0506391 -0.0706685 -0.0384751 0.809127 0.130443 0.0781142 -0.12526 0.809504 98.7134 113.731 149.554 ] 15 -0.755302 [ 0.815339 0.0506395 -0.0706681 -0.0384753 0.809127 0.130443 0.0781132 -0.125262 0.809503 98.7133 113.732 149.554 ] 16 -0.755303 [ 0.815337 0.0506401 -0.0706675 -0.0384756 0.809127 0.130443 0.0781119 -0.125264 0.8095 98.7133 113.732 149.554 ] 17 -0.755303 [ 0.815335 0.0506406 -0.070667 -0.0384758 0.809127 0.130443 0.0781108 -0.125265 0.809499 98.7133 113.732 149.553 ] 18 -0.755304 [ 0.815333 0.0506415 -0.0706662 -0.0384762 0.809127 0.130444 0.0781089 -0.125268 0.809496 98.7133 113.732 149.553 ] 19 -0.755307 [ 0.815332 0.0506417 -0.070666 -0.0384764 0.809127 0.130444 0.0781083 -0.125269 0.809495 98.7133 113.732 149.553 ] 20 -0.755307 [ 0.815332 0.0506419 -0.0706658 -0.0384765 0.809128 0.130444 0.0781079 -0.12527 0.809494 98.7133 113.732 149.553 ] 21 -0.755306 [ 0.815331 0.0506423 -0.0706655 -0.0384767 0.809128 0.130444 0.0781072 -0.125271 0.809494 98.7133 113.732 149.553 ] 22 -0.755303 [ 0.81533 0.0506428 -0.070665 -0.0384771 0.809128 0.130445 0.078106 -0.125274 0.809492 98.7133 113.732 149.553 ] 23 -0.755307 [ 0.815328 0.0506437 -0.0706642 -0.0384777 0.809128 0.130446 0.0781041 -0.125277 0.80949 98.7133 113.732 149.553 ] 24 -0.755308 [ 0.815328 0.0506441 -0.0706638 -0.038478 0.809129 0.130446 0.0781033 -0.125279 0.809489 98.7133 113.732 149.552 ] 25 -0.755309 [ 0.815327 0.0506445 -0.0706635 -0.0384782 0.809129 0.130446 0.0781026 -0.12528 0.809488 98.7133 113.732 149.552 ] 26 -0.755308 [ 0.815326 0.050645 -0.0706629 -0.0384787 0.809129 0.130447 0.0781014 -0.125282 0.809487 98.7133 113.732 149.552 ] 27 -0.755305 [ 0.815325 0.0506454 -0.0706625 -0.038479 0.809129 0.130448 0.0781006 -0.125284 0.809486 98.7133 113.732 149.552 ] 28 -0.755306 [ 0.815325 0.0506461 -0.0706619 -0.0384796 0.80913 0.130448 0.0780991 -0.125287 0.809485 98.7133 113.732 149.552 ] 29 -0.755309 [ 0.815324 0.0506467 -0.0706613 -0.03848 0.80913 0.130449 0.0780979 -0.125289 0.809484 98.7134 113.732 149.552 ] 30 -0.75531 [ 0.815323 0.0506476 -0.0706603 -0.0384809 0.809131 0.130451 0.078096 -0.125293 0.809482 98.7134 113.732 149.552 ] 31 -0.755308 [ 0.815321 0.0506491 -0.0706587 -0.0384823 0.809132 0.130453 0.0780927 -0.125299 0.80948 98.7135 113.733 149.552 ] 32 -0.75531 [ 0.81532 0.050651 -0.0706564 -0.0384843 0.809134 0.130457 0.0780883 -0.125308 0.809477 98.7136 113.733 149.552 ] 33 -0.755314 [ 0.815318 0.0506535 -0.0706531 -0.0384871 0.809135 0.130462 0.0780825 -0.125319 0.809474 98.7138 113.733 149.552 ] 34 -0.755316 [ 0.815316 0.0506572 -0.0706476 -0.0384916 0.809137 0.130472 0.0780735 -0.125336 0.809471 98.714 113.734 149.552 ] 35 -0.755319 [ 0.815315 0.050662 -0.0706387 -0.0384985 0.809137 0.130489 0.0780602 -0.12536 0.809468 98.7144 113.735 149.552 ] 36 -0.755333 [ 0.815315 0.0506635 -0.0706351 -0.0385011 0.809136 0.130497 0.0780553 -0.125368 0.809468 98.7145 113.735 149.551 ] 37 -0.755332 [ 0.815315 0.0506648 -0.0706317 -0.0385036 0.809135 0.130504 0.0780507 -0.125376 0.809469 98.7146 113.736 149.551 ] 38 -0.755333 [ 0.815315 0.0506668 -0.0706263 -0.0385074 0.809133 0.130517 0.0780434 -0.125387 0.80947 98.7148 113.736 149.551 ] 39 -0.755332 [ 0.815316 0.0506695 -0.0706183 -0.0385132 0.809129 0.130536 0.0780325 -0.125403 0.809474 98.7151 113.736 149.551 ] 40 -0.755337 [ 0.815315 0.0506719 -0.0706114 -0.0385178 0.809126 0.130552 0.0780234 -0.125416 0.809479 98.7154 113.737 149.551 ] 41 -0.755342 [ 0.815316 0.0506739 -0.0706047 -0.0385225 0.809123 0.130569 0.0780141 -0.125427 0.809483 98.7155 113.737 149.55 ] 42 -0.755336 [ 0.81532 0.050682 -0.0705743 -0.0385441 0.809107 0.130644 0.0779738 -0.125482 0.809506 98.717 113.738 149.549 ] 43 -0.755348 [ 0.815319 0.0506828 -0.0705752 -0.0385425 0.809106 0.130642 0.0779724 -0.12548 0.809506 98.7158 113.738 149.549 ] 44 -0.755338 [ 0.815318 0.0506813 -0.0705752 -0.0385427 0.809106 0.130642 0.0779751 -0.12548 0.809506 98.717 113.738 149.549 ] Stop condition from optimizer.ConjugateGradientLineSearchOptimizerv4Template: Convergence checker passed at iteration 45. Registration tool 45 iterations. Writing ./D006_64428017_T2_SAG_CROP_to_Cropped_BCD_ACPC_Aligned.h5. Warp intra subject images within one modality to the first image of that modality channel... ResampleInPlaceImageList... Map size: 2 T1(1): 0x2dacea0ImageRegion (0x2dad078) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] ImageRegion (0x2dad0e8) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186]

T2(1): 0x2d8b9b0ImageRegion (0x2d8bb88) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] ImageRegion (0x2d8bbf8) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164]

ResamplingInPlace input image T1 #0 to the physical space of the first image. ResamplingInPlace input image T2 #0 to the physical space of the first image. Resampling each intra subject image to the first image of its modality using Linear interpolation. Average co-registered Intra subject images FirstKeyAveragedImage Image (0x2da03b0) RTTI typeinfo: itk::Image<float, 3u> Reference Count: 3 Modified Time: 5373609 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 5373579 UpdateMTime: 5373608 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] Spacing: [1, 1, 1] Origin: [-107.5, -100.5, -89.5] Direction: 1 0 0 0 1 0 0 0 1

IndexToPointMatrix: 1 0 0 0 1 0 0 0 1

PointToIndexMatrix: 1 0 0 0 1 0 0 0 1

Inverse Direction: 1 0 0 0 1 0 0 0 1

PixelContainer: ImportImageContainer (0x478c770) RTTI typeinfo: itk::ImportImageContainer<unsigned long, float> Reference Count: 1 Modified Time: 5373601 Debug: Off Object Name: Observers: none Pointer: 0x2ad43711a010 Container manages memory: true Size: 8905680 Capacity: 8905680

SecondKeyAveragedImage Image (0x478c4e0) RTTI typeinfo: itk::Image<float, 3u> Reference Count: 3 Modified Time: 5373663 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 5373623 UpdateMTime: 5373662 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] Spacing: [0.999603, 0.999603, 0.999603] Origin: [61.4092, 134.89, -90.361] Direction: -0.994376 0.0473292 0.0947389 -0.0615561 -0.986247 -0.153386 0.0861763 -0.158355 0.983614

IndexToPointMatrix: -0.993982 0.0473104 0.0947013 -0.0615317 -0.985856 -0.153325 0.0861421 -0.158292 0.983224

PointToIndexMatrix: -0.994771 -0.0615805 0.0862106 0.047348 -0.986639 -0.158418 0.0947765 -0.153447 0.984005

Inverse Direction: -0.994376 -0.0615561 0.0861763 0.0473292 -0.986247 -0.158355 0.0947389 -0.153386 0.983614

PixelContainer: ImportImageContainer (0x25149e0) RTTI typeinfo: itk::ImportImageContainer<unsigned long, float> Reference Count: 1 Modified Time: 5373651 Debug: Off Object Name: Observers: none Pointer: 0x637c270 Container manages memory: true Size: 4600200 Capacity: 4600200

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Register atlas to subject images... ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

SyN registration is restored from state, and no atlasToSubjectInitialTransform is needed.

Registering first atlas image to first subject image. Multimodal registration will be run using the first two modalities. Number of modalities is: 2 Generating MovingImage Mask (Atlas 0) ListSample TotalFrequency is 16777216 4097 ValidHistogramsEntries, 16777216 TotalFrequency 0.01 ---> 0 0.99 ---> 3335 LowHigh Thresholds: [1200,-2147483648] Generating FixedImage Mask (Subject) ListSample TotalFrequency is 8905680 4044 ValidHistogramsEntries, 8905680 TotalFrequency 0.01 ---> 1 0.99 ---> 3287 LowHigh Thresholds: [1406,-2147483648] Registering (SyN) atlas to template image. Multi-modal registration is run! Number of image pairs: 2 In BRAINSFit the same metric is used for both modalities: MMI TranformTypes: SyN(1 of 1).

=============================== ITKv4 Registration: Starting Transform Estimations for SyN(1 of 1).===============================

Do Multimodal Registration... Initial FixedToMiddle and MovingToMiddle transforms are restored from the registration state file. Dimension = 3 Number of stages = 1 Use Histogram Matching true Winsorize image intensities false Lower quantile = 0 Upper quantile = 1 Stage 1 State Image metric = Mattes Fixed image = Image (0x2d96ad0) RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 6266392 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 6266315 UpdateMTime: 6266322 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] Spacing: [1, 1, 1] Origin: [-107.5, -100.5, -89.5] Direction: 1 0 0 0 1 0 0 0 1

IndexToPointMatrix: 1 0 0 0 1 0 0 0 1

PointToIndexMatrix: 1 0 0 0 1 0 0 0 1

Inverse Direction: 1 0 0 0 1 0 0 0 1

PixelContainer: ImportImageContainer (0x4770930) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 6266320 Debug: Off Object Name: Observers: none Pointer: 0x2ad480000010 Container manages memory: true Size: 8905680 Capacity: 8905680

 Moving image = Image (0x2d96de0)

RTTI typeinfo: itk::Image<double, 3u> Reference Count: 2 Modified Time: 6266391 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 6266336 UpdateMTime: 6266343 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [256, 256, 256] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [256, 256, 256] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [256, 256, 256] Spacing: [1, 1, 1] Origin: [-127.5, -127.5, -127.5] Direction: 1 0 0 0 1 0 0 0 1

IndexToPointMatrix: 1 0 0 0 1 0 0 0 1

PointToIndexMatrix: 1 0 0 0 1 0 0 0 1

Inverse Direction: 1 0 0 0 1 0 0 0 1

PixelContainer: ImportImageContainer (0x2514830) RTTI typeinfo: itk::ImportImageContainer<unsigned long, double> Reference Count: 1 Modified Time: 6266341 Debug: Off Object Name: Observers: none Pointer: 0x2ad4c2f5c010 Container manages memory: true Size: 16777216 Capacity: 16777216

 Weighting = 1
 Sampling strategy = random
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.05

Transform = SyN Gradient step = 0.15 Update field sigma (voxel space) = 3 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Registration using 1 total stages.

Stage 0 iterations = 100 convergence threshold = 1e-06 convergence window size = 10 number of levels = 1 using the Mattes MI metric (number of bins = 32, weight = 1) preprocessing: histogram matching the images using the Mattes MI metric (number of bins = 32, weight = 1) preprocessing: histogram matching the images Shrink factors (level 1 out of 1): [1, 1, 1] smoothing sigmas per level: [0] random sampling (percentage = 0.05) Current SyN transform is directly initialized from the previous stage.

*** Running SyN registration (varianceForUpdateField = 3, varianceForTotalField = 0) ***

XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -4.169469400916e-01, 1.797693134862e+308, 1.2294e+01, 1.2294e+01, 1DIAGNOSTIC, 2, -4.170904998311e-01, 1.797693134862e+308, 2.4827e+01, 1.2533e+01, 1DIAGNOSTIC, 3, -4.172579107550e-01, 1.797693134862e+308, 3.6956e+01, 1.2129e+01, 1DIAGNOSTIC, 4, -4.174101485448e-01, 1.797693134862e+308, 5.4106e+01, 1.7149e+01, 1DIAGNOSTIC, 5, -4.175555822063e-01, 1.797693134862e+308, 6.6328e+01, 1.2222e+01, 1DIAGNOSTIC, 6, -4.176861197601e-01, 1.797693134862e+308, 8.0864e+01, 1.4537e+01, 1DIAGNOSTIC, 7, -4.178191091423e-01, 1.797693134862e+308, 9.2108e+01, 1.1244e+01, 1DIAGNOSTIC, 8, -4.179980541975e-01, 1.797693134862e+308, 1.0463e+02, 1.2526e+01, 1DIAGNOSTIC, 9, -4.181373798147e-01, 1.797693134862e+308, 1.2033e+02, 1.5696e+01, 1DIAGNOSTIC, 10, -4.182747659024e-01, 2.056134739332e-04, 1.3186e+02, 1.1527e+01, 1DIAGNOSTIC, 11, -4.183814555609e-01, 1.834198237518e-04, 1.4284e+02, 1.0984e+01, 1DIAGNOSTIC, 12, -4.184802599304e-01, 1.623066840850e-04, 1.5438e+02, 1.1541e+01, 1DIAGNOSTIC, 13, -4.185660336510e-01, 1.430791793425e-04, 1.6639e+02, 1.2010e+01, 1DIAGNOSTIC, 14, -4.186037148332e-01, 1.228876591891e-04, 1.7835e+02, 1.1954e+01, 1DIAGNOSTIC, 15, -4.186398067828e-01, 1.025713271474e-04, 1.8983e+02, 1.1484e+01, 1DIAGNOSTIC, 16, -4.186385951482e-01, 8.103140625494e-05, 2.0200e+02, 1.2167e+01, 1DIAGNOSTIC, 17, -4.186665846951e-01, 6.109091620926e-05, 2.1490e+02, 1.2903e+01, 1DIAGNOSTIC, 18, -4.187042450617e-01, 4.597490506354e-05, 2.2706e+02, 1.2162e+01, 1DIAGNOSTIC, 19, -4.187633798558e-01, 3.535310375479e-05, 2.3815e+02, 1.1083e+01, 1DIAGNOSTIC, 20, -4.188310917926e-01, 2.956844026518e-05, 2.5040e+02, 1.2249e+01, 1DIAGNOSTIC, 21, -4.189356613900e-01, 2.850144973456e-05, 2.6292e+02, 1.2529e+01, 1DIAGNOSTIC, 22, -4.189999133937e-01, 2.994908281569e-05, 2.7428e+02, 1.1353e+01, 1DIAGNOSTIC, 23, -4.191151591983e-01, 3.451032995325e-05, 2.8855e+02, 1.4278e+01, 1DIAGNOSTIC, 24, -4.192363854268e-01, 4.000478700476e-05, 3.0052e+02, 1.1964e+01, 1DIAGNOSTIC, 25, -4.193488431365e-01, 4.541463435082e-05, 3.1236e+02, 1.1844e+01, 1DIAGNOSTIC, 26, -4.194453465358e-01, 4.870581556838e-05, 3.2399e+02, 1.1630e+01, 1DIAGNOSTIC, 27, -4.195323557218e-01, 5.015830950151e-05, 3.3564e+02, 1.1646e+01, 1DIAGNOSTIC, 28, -4.196749403604e-01, 5.122729811476e-05, 3.4779e+02, 1.2148e+01, 1DIAGNOSTIC, 29, -4.197419913890e-01, 5.035358737807e-05, 3.6249e+02, 1.4703e+01, 1DIAGNOSTIC, 30, -4.198368736327e-01, 4.851973837642e-05, 3.7433e+02, 1.1839e+01, 1DIAGNOSTIC, 31, -4.199067960716e-01, 4.612474168143e-05, 3.8631e+02, 1.1983e+01, 1DIAGNOSTIC, 32, -4.199920412730e-01, 4.273306332563e-05, 3.9915e+02, 1.2844e+01, 1DIAGNOSTIC, 33, -4.200325354158e-01, 3.871917073931e-05, 4.1080e+02, 1.1650e+01, 1DIAGNOSTIC, 34, -4.201017292157e-01, 3.512650578784e-05, 4.2345e+02, 1.2641e+01, 1DIAGNOSTIC, 35, -4.201351319695e-01, 3.128867200223e-05, 4.3597e+02, 1.2528e+01, 1DIAGNOSTIC, 36, -4.202044047320e-01, 2.788220118841e-05, 4.4779e+02, 1.1819e+01, 1DIAGNOSTIC, 37, -4.202110815747e-01, 2.373559873110e-05, 4.5965e+02, 1.1857e+01, 1DIAGNOSTIC, 38, -4.202849194386e-01, 2.149896329025e-05, 4.7128e+02, 1.1630e+01, 1DIAGNOSTIC, 39, -4.202885715227e-01, 1.858925607245e-05, 4.8336e+02, 1.2084e+01, 1DIAGNOSTIC, 40, -4.203419289055e-01, 1.663625143675e-05, 4.9507e+02, 1.1705e+01, 1DIAGNOSTIC, 41, -4.203596964832e-01, 1.467816000247e-05, 5.0657e+02, 1.1500e+01, 1DIAGNOSTIC, 42, -4.203776638072e-01, 1.314942710710e-05, 5.1810e+02, 1.1535e+01, 1DIAGNOSTIC, 43, -4.203846884920e-01, 1.123951125239e-05, 5.3007e+02, 1.1966e+01, 1DIAGNOSTIC, 44, -4.203993381985e-01, 9.701731779398e-06, 5.4149e+02, 1.1423e+01, 1DIAGNOSTIC, 45, -4.204091876815e-01, 7.999850065537e-06, 5.5507e+02, 1.3579e+01, 1DIAGNOSTIC, 46, -4.204413736650e-01, 7.173112754832e-06, 5.6660e+02, 1.1528e+01, 1DIAGNOSTIC, 47, -4.204749900711e-01, 6.311455666989e-06, 5.7830e+02, 1.1699e+01, 1DIAGNOSTIC, 48, -4.205035679370e-01, 6.395423636219e-06, 5.8976e+02, 1.1458e+01, 1DIAGNOSTIC, 49, -4.205474826320e-01, 6.568065344107e-06, 6.0135e+02, 1.1594e+01, 1DIAGNOSTIC, 50, -4.205805483959e-01, 7.326347644099e-06, 6.1347e+02, 1.2117e+01, 1DIAGNOSTIC, 51, -4.206173395359e-01, 8.127309125930e-06, 6.2479e+02, 1.1321e+01, 1DIAGNOSTIC, 52, -4.206757458777e-01, 9.165432686878e-06, 6.3731e+02, 1.2525e+01, 1DIAGNOSTIC, 53, -4.206872153074e-01, 9.564255301183e-06, 6.4959e+02, 1.2278e+01, 1DIAGNOSTIC, 54, -4.207186211460e-01, 9.674146683597e-06, 6.6113e+02, 1.1542e+01, 1DIAGNOSTIC, 55, -4.207397145185e-01, 9.280126507354e-06, 6.7299e+02, 1.1855e+01, 1DIAGNOSTIC, 56, -4.207720127051e-01, 8.833813683010e-06, 6.8475e+02, 1.1762e+01, 1DIAGNOSTIC, 57, -4.208109949434e-01, 8.459338301299e-06, 6.9631e+02, 1.1564e+01, 1DIAGNOSTIC, 58, -4.208396407435e-01, 7.993262933079e-06, 7.0854e+02, 1.2223e+01, 1DIAGNOSTIC, 59, -4.208753306161e-01, 7.741186044484e-06, 7.2021e+02, 1.1674e+01, 1DIAGNOSTIC, 60, -4.209083644780e-01, 7.542339612858e-06, 7.3134e+02, 1.1127e+01, 1DIAGNOSTIC, 61, -4.209454105906e-01, 7.475116346203e-06, 7.4268e+02, 1.1346e+01, 1DIAGNOSTIC, 62, -4.209802004754e-01, 7.753064459715e-06, 7.5496e+02, 1.2273e+01, 1DIAGNOSTIC, 63, -4.209949043686e-01, 7.597216067155e-06, 7.6651e+02, 1.1553e+01, 1DIAGNOSTIC, 64, -4.210335769416e-01, 7.507206844101e-06, 7.7799e+02, 1.1475e+01, 1DIAGNOSTIC, 65, -4.210562031775e-01, 7.188257764853e-06, 7.8956e+02, 1.1575e+01, 1DIAGNOSTIC, 66, -4.210768770153e-01, 6.767061660150e-06, 8.0089e+02, 1.1328e+01, 1DIAGNOSTIC, 67, -4.210771141188e-01, 6.146242576131e-06, 8.1253e+02, 1.1638e+01, 1DIAGNOSTIC, 68, -4.210864139770e-01, 5.375871647931e-06, 8.2404e+02, 1.1509e+01, 1DIAGNOSTIC, 69, -4.211095906273e-01, 4.726261136729e-06, 8.3571e+02, 1.1671e+01, 1DIAGNOSTIC, 70, -4.211399321468e-01, 4.282194218256e-06, 8.4793e+02, 1.2226e+01, 1DIAGNOSTIC, 71, -4.211505542395e-01, 3.926173757201e-06, 8.5959e+02, 1.1656e+01, 1DIAGNOSTIC, 72, -4.211690261889e-01, 3.752524887787e-06, 8.7172e+02, 1.2132e+01, 1DIAGNOSTIC, 73, -4.211830760005e-01, 3.525046462718e-06, 8.8300e+02, 1.1281e+01, 1DIAGNOSTIC, 74, -4.212093328005e-01, 3.591189318470e-06, 8.9446e+02, 1.1458e+01, 1DIAGNOSTIC, 75, -4.212140621924e-01, 3.585276382454e-06, 9.0583e+02, 1.1367e+01, 1DIAGNOSTIC, 76, -4.212373423611e-01, 3.670753567997e-06, 9.1702e+02, 1.1193e+01, 1DIAGNOSTIC, 77, -4.212460099359e-01, 3.517763224832e-06, 9.2922e+02, 1.2195e+01, 1DIAGNOSTIC, 78, -4.212666790658e-01, 3.325472880475e-06, 9.4108e+02, 1.1868e+01, 1DIAGNOSTIC, 79, -4.212995007059e-01, 3.327108726619e-06, 9.5336e+02, 1.2280e+01, 1DIAGNOSTIC, 80, -4.213288026035e-01, 3.545315088494e-06, 9.6486e+02, 1.1498e+01, 1DIAGNOSTIC, 81, -4.213685830899e-01, 3.871274825979e-06, 9.7686e+02, 1.1997e+01, 1DIAGNOSTIC, 82, -4.213913668741e-01, 4.189072690276e-06, 9.8887e+02, 1.2014e+01, 1DIAGNOSTIC, 83, -4.214332796915e-01, 4.584069292173e-06, 1.0003e+03, 1.1460e+01, 1DIAGNOSTIC, 84, -4.214495915848e-01, 4.900805803645e-06, 1.0115e+03, 1.1170e+01, 1DIAGNOSTIC, 85, -4.214765634366e-01, 5.020795603911e-06, 1.0231e+03, 1.1640e+01, 1DIAGNOSTIC, 86, -4.215058901814e-01, 5.101065834089e-06, 1.0346e+03, 1.1446e+01, 1DIAGNOSTIC, 87, -4.215383622717e-01, 5.036987560224e-06, 1.0464e+03, 1.1861e+01, 1DIAGNOSTIC, 88, -4.215595119997e-01, 4.837158721108e-06, 1.0597e+03, 1.3210e+01, 1DIAGNOSTIC, 89, -4.215838701727e-01, 4.641808824288e-06, 1.0720e+03, 1.2339e+01, 1DIAGNOSTIC, 90, -4.216111676107e-01, 4.456566708340e-06, 1.0834e+03, 1.1354e+01, 1DIAGNOSTIC, 91, -4.216118172336e-01, 4.173659871241e-06, 1.0960e+03, 1.2682e+01, 1DIAGNOSTIC, 92, -4.216374915883e-01, 3.879004219122e-06, 1.1083e+03, 1.2247e+01, 1DIAGNOSTIC, 93, -4.216525212269e-01, 3.659384875553e-06, 1.1197e+03, 1.1392e+01, 1DIAGNOSTIC, 94, -4.216507587347e-01, 3.223982001659e-06, 1.1308e+03, 1.1176e+01, 1DIAGNOSTIC, 95, -4.216560030723e-01, 2.747942445352e-06, 1.1419e+03, 1.1012e+01, 1DIAGNOSTIC, 96, -4.216477478298e-01, 2.193939517088e-06, 1.1533e+03, 1.1454e+01, 1DIAGNOSTIC, 97, -4.216555598738e-01, 1.751479982522e-06, 1.1645e+03, 1.1196e+01, 1DIAGNOSTIC, 98, -4.216462064908e-01, 1.255304216994e-06, 1.1757e+03, 1.1197e+01, 1DIAGNOSTIC, 99, -4.216506594813e-01, 8.748012744232e-07, 1.1871e+03, 1.1349e+01, Elapsed time (stage 0): 1189.62

Total elapsed time: 1189.64 Writing the registration state: SavedBABCInternalSyNState.h5 Registration tool 0 iterations. Writing atlas_to_subject.h5PreSegmentation.h5. Registration took 1310.57 s ResampleInPlaceImageList... Map size: 2 T1(1): 0x2dacea0ImageRegion (0x2dad078) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] ImageRegion (0x2dad0e8) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186]

T2(1): 0x2d8b9b0ImageRegion (0x2d8bb88) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] ImageRegion (0x2d8bbf8) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164]

ResamplingInPlace input image T1 #0 to the physical space of the first image. ResamplingInPlace input image T2 #0 to the physical space of the first image. Resampling each intra subject image to the first image of its modality using Linear interpolation. ResampleInPlaceImageList... Map size: 2 T1(1): 0x2dacea0ImageRegion (0x2dad078) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] ImageRegion (0x2dad0e8) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186]

T2(1): 0x2d8b9b0ImageRegion (0x2d8bb88) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] ImageRegion (0x2d8bbf8) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164]

ResamplingInPlace input image T1 #0 to the physical space of the first image. ResamplingInPlace input image T2 #0 to the physical space of the first image. Resampling each intra subject image to the first image of its modality using Linear interpolation. Map size: 2 T1(1): 0x256d1a0ImageRegion (0x256d378) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] ImageRegion (0x256d3e8) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186]

T2(1): 0x4778820ImageRegion (0x47789f8) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] ImageRegion (0x4778a68) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164]

Rescale intensity of filtered images... MESSAGE: USING AIR INDEX of :0 Set and Normalize for segmentation. Start segmentation... Map size: 2 T1(1): 0x2d9e690ImageRegion (0x2d9e868) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186] ImageRegion (0x2d9e8d8) Dimension: 3 Index: [0, 0, 0] Size: [210, 228, 186]

T2(1): 0x2d8b9b0ImageRegion (0x2d8bb88) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164] ImageRegion (0x2d8bbf8) Dimension: 3 Index: [0, 0, 0] Size: [150, 187, 164]

SetInputImages SetRawInputImages SetAtlasImages SetPriorWeights SetPriorLabelCodeVector SetPriorUseForBiasVector SetPriorIsForegroundPriorVector

Generating pure plug mask... Threshold value is set to: 0.1 Input number of subsamples per each direction in voxel space: [0, 0, 0]

Normalize input intensity images...

Number of subsamples at each plug region cannot be zero! Note that number of subsamples are automatically recomputed per each direction in voxel space as: [1, 1, 1] Generating pure plugs mask took 32.9071 s. ListSample TotalFrequency is 8905680 4096 ValidHistogramsEntries, 8905680 TotalFrequency 0.01 ---> 1 0.99 ---> 3330 LowHigh Thresholds: [1424,-2147483648] ComputeForegroundProbMask Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. Resampling input image map to the first key image. RANGE: [0.01,0.99] RANGE: [0.01,0.99] RANGE: [0.04,0.99] RANGE: [0.01,0.98] Quantile Thresholds: [ 0.01, 0.99 ] Quantile Thresholds: [ 0.04, 0.99 ] RANGE: [0,0.1] RANGE: [0,0.1] Quantile Thresholds: [ 0, 0.1 ] RANGE: [0.15,0.9] RANGE: [0,0.3] Quantile Thresholds: [ 0.15, 0.9 ] RANGE: [0,0.95] RANGE: [0.05,1] Quantile Thresholds: [ 0, 0.95 ] RANGE: [0.05,1] RANGE: [0.03,0.99] Quantile Thresholds: [ 0.05, 1 ] RANGE: [0.01,0.99] RANGE: [0.01,0.99] Quantile Thresholds: [ 0.01, 0.99 ] RANGE: [0.01,0.99] RANGE: [0.02,0.99] Quantile Thresholds: [ 0.01, 0.99 ] RANGE: [0,0.6] RANGE: [0.2,1] RANGE: [0.05,0.98] RANGE: [0.05,0.97] Quantile Thresholds: [ 0, 0.6 ] Quantile Thresholds: [ 0.05, 0.98 ] RANGE: [0.4,1] RANGE: [0.1,0.85] Quantile Thresholds: [ 0.4, 1 ] RANGE: [0.15,0.9] RANGE: [0.35,1] Quantile Thresholds: [ 0.15, 0.9 ] RANGE: [0.01,0.99] RANGE: [0.05,0.98] Quantile Thresholds: [ 0.01, 0.99 ] RANGE: [0.1,1] RANGE: [0.001,0.98] Quantile Thresholds: [ 0.1, 1 ] ListSample TotalFrequency is 1787877 RANGE: [0.04,0.75] RANGE: [0,0.2] Quantile Thresholds: [ 0.04, 0.75 ] ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [115.848,4063.98] Quantile Thresholds: [ 0.01, 0.99 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [1,703.216] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [558.835,4096] Quantile Thresholds: [ 0.2, 1 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [115.848,4063.98] Quantile Thresholds: [ 0.1, 0.85 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [115.848,4063.98] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [306.168,4031.96] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [1,342.263] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [342.263,4096] Quantile Thresholds: [ 0.05, 0.98 ] Quantile Thresholds: [ 0.02, 0.99 ] Quantile Thresholds: [ 0.05, 0.97 ] Quantile Thresholds: [ 0.001, 0.98 ] Quantile Thresholds: [ 0, 0.1 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [306.168,4096] Quantile Thresholds: [ 0.03, 0.99 ] ListSample TotalFrequency is 1787877 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 1147 ValidHistogramsEntries, 1787877 TotalFrequency LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [298.949,4063.98] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [1,955.883] ListSample TotalFrequency is 1787877 Quantile Thresholds: [ 0.01, 0.98 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [115.848,4063.98] Quantile Thresholds: [ 0.05, 1 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [378.358,919.788] Quantile Thresholds: [ 0.01, 0.99 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [298.949,811.502] Quantile Thresholds: [ 0.35, 1 ] ListSample TotalFrequency is 1787877 Quantile Thresholds: [ 0, 0.2 ] 1147 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 288 0.975 ---> 973 LowHigh Thresholds: [ 288.12, 288.12, 973.931 ] DEBUG:MINMAX:DEBUG: [1,4096] DEBUG:LINLOWHIGH:DEBUG: [288.12,973.931] DEBUG:RANGE:DEBUG: [378.358,919.788] ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 Quantile Thresholds: [ 0, 0.3 ] ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 ListSample TotalFrequency is 1787877 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [59.7791,4080.94] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [606.011,4096]

==CRBLGM========================= [CRBLGM,T1]: [0.01,0.99] [CRBLGM,T2]: [0.01,0.99]

==NOTCSF========================= [NOTCSF,T1]: [0,0.6] [NOTCSF,T2]: [0.2,1]

4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [5.97791,4065.89] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [162.492,4080.94] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [214.671,2614.89]

==WM========================= [WM,T1]: [0.1,1] [WM,T2]: [0.001,0.98]

4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [119.558,4080.94]

==HIPPOCAMPUS========================= [HIPPOCAMPUS,T1]: [0.05,0.98] [HIPPOCAMPUS,T2]: [0.05,0.97]

==CRBLWM========================= [CRBLWM,T1]: [0.05,1] [CRBLWM,T2]: [0.03,0.99]

4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [0,345.118] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [345.118,2301.82] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [997.35,4096]

==BASAL========================= [BASAL,T1]: [0.01,0.99] [BASAL,T2]: [0.02,0.99]

4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [59.7791,4080.94] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [59.7791,4065.89]

==AIR========================= [AIR,T1]: [0,0.1] [AIR,T2]: [0,0.1]

4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [214.671,4096] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [0,606.011] 4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [0,866.904]

==NOTWM========================= [NOTWM,T1]: [0.4,1] [NOTWM,T2]: [0.1,0.85]

==NOTGM========================= [NOTGM,T1]: [0.15,0.9] [NOTGM,T2]: [0.35,1] **

==GLOBUS========================= [GLOBUS,T1]: [0.01,0.99] [GLOBUS,T2]: [0.01,0.99]

==CSF========================= [CSF,T1]: [0,0.95] [CSF,T2]: [0.05,1]

==SURFGM========================= [SURFGM,T1]: [0.04,0.99] [SURFGM,T2]: [0.01,0.98]

==VB========================= [VB,T1]: [0.04,0.75] [VB,T2]: [0,0.2]

==NOTVB========================= [NOTVB,T1]: [0.15,0.9] [NOTVB,T2]: [0,0.3]

4094 ValidHistogramsEntries, 1787877 TotalFrequency 0.025 ---> 149 0.975 ---> 2627 LowHigh Thresholds: [ 149.448, 149.448, 2627.93 ] DEBUG:MINMAX:DEBUG: [0,4096] DEBUG:LINLOWHIGH:DEBUG: [149.448,2627.93] DEBUG:RANGE:DEBUG: [214.671,4065.89]

==THALAMUS========================= [THALAMUS,T1]: [0.01,0.99] [THALAMUS,T2]: [0.05,0.98]

^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ Locations with no candidate regions specified!1749720 ^^^^^^^^^^^^^^^^ ^^^^^^^^^^^^^^^^ Start Blending Prior:0 Not Blending Posteriors into Priors Start Blending Prior:1 Not Blending Posteriors into Priors Start Blending Prior:2 Not Blending Posteriors into Priors Start Blending Prior:3 Not Blending Posteriors into Priors Start Blending Prior:4 Not Blending Posteriors into Priors Start Blending Prior:5 Not Blending Posteriors into Priors Start Blending Prior:6 Not Blending Posteriors into Priors Start Blending Prior:7 Not Blending Posteriors into Priors Start Blending Prior:8 Not Blending Posteriors into Priors Start Blending Prior:9 Not Blending Posteriors into Priors Start Blending Prior:10 Not Blending Posteriors into Priors Start Blending Prior:11 Not Blending Posteriors into Priors Start Blending Prior:12 Not Blending Posteriors into Priors Start Blending Prior:13 Not Blending Posteriors into Priors Start Blending Prior:14 Not Blending Posteriors into Priors

Computing labels... label: 0 count: 8627856 label: 1 count: 0 label: 2 count: 1649 label: 4 count: 1287 label: 5 count: 79 label: 6 count: 34665 label: 7 count: 23534 label: 8 count: 191050 label: 9 count: 25560 label: 11 count: 0 label: 12 count: 0 label: 19 count: 0 label: 23 count: 0 label: 24 count: 0 label: 25 count: 0

WARNING: Increasing importance of label 1 because too few samples found. 0 < 100

WARNING: Increasing importance of label 5 because too few samples found. 79 < 100

WARNING: Increasing importance of label 11 because too few samples found. 0 < 100

WARNING: Increasing importance of label 12 because too few samples found. 0 < 100

WARNING: Increasing importance of label 19 because too few samples found. 0 < 100

WARNING: Increasing importance of label 23 because too few samples found. 0 < 100

WARNING: Increasing importance of label 24 because too few samples found. 0 < 100

WARNING: Increasing importance of label 25 because too few samples found. 0 < 100 label: 0 count: 8627854 label: 1 count: 0 label: 2 count: 1648 label: 4 count: 1282 label: 5 count: 87 label: 6 count: 34665 label: 7 count: 23534 label: 8 count: 191050 label: 9 count: 25560 label: 11 count: 0 label: 12 count: 0 label: 19 count: 0 label: 23 count: 0 label: 24 count: 0 label: 25 count: 0

WARNING: Increasing importance of label 1 because too few samples found. 0 < 100

WARNING: Increasing importance of label 5 because too few samples found. 87 < 100

WARNING: Increasing importance of label 11 because too few samples found. 0 < 100

WARNING: Increasing importance of label 12 because too few samples found. 0 < 100

WARNING: Increasing importance of label 19 because too few samples found. 0 < 100

WARNING: Increasing importance of label 23 because too few samples found. 0 < 100

WARNING: Increasing importance of label 24 because too few samples found. 0 < 100

WARNING: Increasing importance of label 25 because too few samples found. 0 < 100 label: 0 count: 8627852 label: 1 count: 0 label: 2 count: 1648 label: 4 count: 1277 label: 5 count: 94 label: 6 count: 34665 label: 7 count: 23534 label: 8 count: 191050 label: 9 count: 25560 label: 11 count: 0 label: 12 count: 0 label: 19 count: 0 label: 23 count: 0 label: 24 count: 0 label: 25 count: 0

WARNING: Increasing importance of label 1 because too few samples found. 0 < 100

WARNING: Increasing importance of label 5 because too few samples found. 94 < 100

WARNING: Increasing importance of label 11 because too few samples found. 0 < 100

WARNING: Increasing importance of label 12 because too few samples found. 0 < 100

WARNING: Increasing importance of label 19 because too few samples found. 0 < 100

WARNING: Increasing importance of label 23 because too few samples found. 0 < 100

WARNING: Increasing importance of label 24 because too few samples found. 0 < 100

WARNING: Increasing importance of label 25 because too few samples found. 0 < 100 label: 0 count: 8627850 label: 1 count: 0 label: 2 count: 1647 label: 4 count: 1272 label: 5 count: 102 label: 6 count: 34665 label: 7 count: 23534 label: 8 count: 191050 label: 9 count: 25560 label: 11 count: 0 label: 12 count: 0 label: 19 count: 0 label: 23 count: 0 label: 24 count: 0 label: 25 count: 0