nextflow config with indv envs #167
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| name: tests ci | |
| # This workflow runs the pipeline with the minimal test dataset to check that it completes any errors | |
| on: | |
| push: | |
| branches: [one_week_format] | |
| pull_request_target: | |
| branches: [one_week_format] | |
| release: | |
| types: [published] | |
| jobs: | |
| push_dockerhub: | |
| name: Push new Docker image to Docker Hub (dev) | |
| runs-on: ubuntu-latest | |
| # Only run for the official repo, for releases and merged PRs | |
| if: ${{ github.repository == 'BU-ISCIII/bacterial_wgs_training' }} | |
| env: | |
| DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
| DOCKERHUB_PASS: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| steps: | |
| - name: Check out pipeline code | |
| uses: actions/checkout@v2 | |
| - name: Build new docker image | |
| run: docker build --no-cache . -t buisciii/bacterial_wgs_training:dev | |
| - name: Push Docker image to DockerHub (develop) | |
| run: | | |
| echo "$DOCKERHUB_PASS" | docker login -u "$DOCKERHUB_USERNAME" --password-stdin | |
| docker push buisciii/bacterial_wgs_training:dev |