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Bacterial WGS training : Exercise 0

Title Working environment setup.
Training dataset:
Questions:
  • Connect to VCenter
  • Copy course data
Objectives:
  • In this document we will cover the working environment setup for the exercises.
Time estimation: 5 min
Key points:
  • Each practical is designed to work on specific folder structure, so make sure you follow these steps correctly.

IMPORTANT: Make sure you understand and execute these commands in the right order.

FOLLOW THESE STEPS:

Summarized is:

In your computer:

  • Open in your internet browser this URL: https://vcsa.isciii.es/.
  • Configuración avanzada > Acceder a vcsa.isciii.es (sitio no seguro) alt text alt text
  • Go to Iniciar VSPHERE CLIENT (HTML5)
  • Then type your ISCIII e-mail and password.
  • Select your working machine (e.g. bioinfo01) in the left pannel
  • Click on INICIAR REMOTE CONSOLE

In the remote console:

  • Now click on your user: alumno, and type the password we will tell you.
  • There, open a firefox window and open this tutorial again by:
    • Google: BU-ISCIII github
    • Select bacterial_wgs_training
    • Exercise0.

alt text alt text alt text alt text alt text

Now you are here again!

Open a new terminal (ctrl+alt+t) and navigate to your home directory if you are not already there:

pwd
cd
pwd
#Output: /home/alumno

Create the project folder for the practises of the course:

mkdir -p wgs

Navigate to the directory:

cd wgs

Download git repository:

git clone https://github.com/BU-ISCIII/bacterial_wgs_training.git

Download training dataset:

cp -r /mnt/ngs_course_shared/bacterial_wgs_training_dataset .

Check that everything is correct:

ls
#Output: bacterial_wgs_training  bacterial_wgs_training_dataset
pwd
#Output: /home/alumno/wgs