Update 02_QualityAndAssembly.md

BU-ISCIII · Oct 15, 2023 · 229437c · 229437c
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commit 229437c
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/exercises/02_QualityAndAssembly.md b/exercises/02_QualityAndAssembly.md
@@ -124,7 +124,6 @@ An now run the main nextflow command for pre-processing
 
 ```
 nextflow run ../../bacterial_wgs_training/main.nf
-  -c ../../bacterial_wgs_training/nextflow_2.config \
   --reads '../RAW/DOWNSAMPLED/*_R{1,2}.fastq.gz' \
   -profile conda \
   --fasta ../REFERENCES/listeria_NC_021827.1_NoPhagues.fna \
@@ -215,7 +214,6 @@ Now we can run the assembly process
 
 ```
 nextflow run ../../bacterial_wgs_training/main.nf \
-  -c ../../bacterial_wgs_training/nextflow_2.config \
   -resume \
   -profile conda \
   --reads '../RAW/DOWNSAMPLED/*_R{1,2}.fastq.gz' \