From 08a759be75fd71e8ab7ee10a2f6d84b643071a47 Mon Sep 17 00:00:00 2001 From: Vincent Kataikko Date: Thu, 7 Sep 2023 17:15:39 +0200 Subject: [PATCH] small changes to reader functions --- db/scripts/read/read_ensembl.py | 8 ++++---- db/scripts/read/read_string.py | 4 ++-- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/db/scripts/read/read_ensembl.py b/db/scripts/read/read_ensembl.py index 713f6f75..b1dbb723 100644 --- a/db/scripts/read/read_ensembl.py +++ b/db/scripts/read/read_ensembl.py @@ -84,10 +84,10 @@ def _reformat_ensembl_term_file(df: pd.DataFrame, file_name: str): "Mus_musculus.GRCm39.109.uniprot", "TFCheckpoint_download_180515", "lost_correlations_symbols", - "Homo_sapiens.GRCh38.110.ena.tsv", - "Homo_sapiens.GRCh38.110.entrez.tsv", - "Homo_sapiens.GRCh38.110.refseq.tsv", - "Homo_sapiens.GRCh38.110.uniprot.tsv", + "Homo_sapiens.GRCh38.110.ena", + "Homo_sapiens.GRCh38.110.entrez", + "Homo_sapiens.GRCh38.110.refseq", + "Homo_sapiens.GRCh38.110.uniprot", ] functions = [ _reformat_entrez, diff --git a/db/scripts/read/read_string.py b/db/scripts/read/read_string.py index 01a10d5b..174f72a9 100644 --- a/db/scripts/read/read_string.py +++ b/db/scripts/read/read_string.py @@ -153,8 +153,8 @@ def _reformat_string_file(df: pd.DataFrame, file_name: str): "protein.info.v11.5", "string_SYMBOL_ENSEMBL", "difference", - "9606.protein.links.v11.5", - "9606.protein.info.v11.5", + "9606.protein.links.v12.0", + "9606.protein.info.v12.0", ] functions = [ _reformat_string_links,