diff --git a/backend/src/main.py b/backend/src/main.py index 0d6e4102..e77a889f 100644 --- a/backend/src/main.py +++ b/backend/src/main.py @@ -186,6 +186,16 @@ def chatbot_response(): return Response(response, mimetype="application/json") +# ====================== AI enrich text ====================== +# TODO Refactor this +# Request comes from ContextSection.vue +@app.route("/api/subgraph/textenrich", methods=["POST"]) +def enrich_text(): + content = request.form.get("content") + + return Response(json.dumps(content), mimetype="application/json") + + # ====================== Subgraph API ====================== # request comes from home.js # TODO Refactor this diff --git a/docs/journalStructure.md b/docs/journalStructure.md index 12da8218..2e89c356 100644 --- a/docs/journalStructure.md +++ b/docs/journalStructure.md @@ -23,20 +23,47 @@ This document contains the structure of Journals having Impact Factor greater th * ProteomeXchange Consortium - PeptideAtlas: stores datasets focusing on peptide identifications and their associated spectral evidence * ImmPort (Immunology Database and Analysis Portal) * Zenodo +* China National GeneBank DataBase (CNGBdb) +* BioProject _________________________________________________________________ ## Cell: IF 45.5 -### Resource availability -* materials availability -* **Data and Code/Software Availability** +_Structure 01:_ +### Resource availability: +#### Materials availability +#### Data and Code/Software Availability + * contains info regarding sequencing data and source code * if code unavailable > “This paper does not report original code” (MUST BE ADDED but not always added) * code available upon request from authors * already-existing SWs and Algorithms used but no unique code generated - found in Key Resources Table * ‘original code’ * ‘unique code’ * ‘custom code’ + * github link for original source code or custom code generated by using already-existing SW + +_Structure 02:_ +### Data and Code/Software Availability: + * contains info regarding sequencing data and source code + +## Cell Stem Cell: IF 19.8 +(some publications are not publicly accessible) +### Resource availability: +#### Lead contact + * requests for resources and reagents +#### Materials availability +#### Data and Code/Software Availability + * section not found in several publications + * sequencing data listed but not source code + * 'original code' + * 'novel code' + * accession numbers of sequencing data & source code URL (Github/Zenodo) listed in Key Resources Table + * accession number stated in plain text instead of a URL + +## Other Cell journals: +* Cancer Cell: 48.8 +* Immunity: 43.47 ## Nature Immunology: IF 27.7 ### Data availability @@ -53,3 +80,20 @@ _________________________________________________________________ * not provided * available from authors upon request * no new code, used existing code + +## Other Nature journals: +* Nature Biotechnology: 68.2 +* Nature Medicine: 87.5 +* Nature Genetics: 31.7 +* Nature: 50.5 +* Nature Cell Biology: 17.3 +* Nature Neuroscience: 29.9 +* Nature Cancer: 38.7 +* Nature Methods: 36.1 +* Nature Metabolism: 25.5 +* Nature Protocols: 17.1 +* Nature Biomedical Engineering: 28.9 +* Nature Microbiology: 20.5 + + +Note: Most of the Science journals cannot be accessed without Institution registration. diff --git a/frontend/package.json b/frontend/package.json index 383a5980..4bd25fd0 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -18,9 +18,12 @@ "d3": "^7.9.0", "d3-scale": "^4.0.2", "material-icons": "^1.13.12", + "file-saver": "^2.0.5", "mitt": "^3.0.1", "ml-hclust": "^3.1.0", "nouislider": "^15.8.1", + "quill": "^2.0.2", + "quill-to-word": "^1.3.0", "primeicons": "^7.0.0", "primevue": "^4.1.1", "random-color-rgb": "^1.1.1", diff --git a/frontend/src/App.vue b/frontend/src/App.vue index e651ccd8..bdbb6b9c 100644 --- a/frontend/src/App.vue +++ b/frontend/src/App.vue @@ -1,5 +1,6 @@