## BgeePipeline*.sif    is the built image
## BgeePipeline*.def    is the Apptainer definition file, with the commands used to build the image

# Build Apptainer image
#NOTE build-date is builtin
export RELEASE=16.0.0
apptainer build BgeePipeline-${RELEASE}.sif BgeePipeline.def 2>&1 >BgeePipeline.apptainer.log


# Inspect image (labels, ...)
apptainer inspect   BgeePipeline-${RELEASE}.sif

# Run image help message
apptainer run-help  BgeePipeline-${RELEASE}.sif

# Run image test run (if any)
apptainer run       BgeePipeline-${RELEASE}.sif

# Run bash in the Apptainer image
apptainer shell     BgeePipeline-${RELEASE}.sif


# Execute image
apptainer exec      BgeePipeline-${RELEASE}.sif <commands>
e.g. apptainer exec BgeePipeline-${RELEASE}.sif R


# Import docker image/container
#from docker hub:
apptainer pull docker://user/image_name:version
#From docker locally (apptainer/singularity#4734)
apptainer pull docker-daemon:image_name:version


####### Container Security

####### Signing and Verifying Containers
#NOTE available in Apptainer 3+ only!