ecology.yaml.lock

install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: pampa_presabs
  owner: ecology
  revisions:
  - 07b081730994
  - 1ebb70b59037
  - 8d8aec182fb1
  - c9dfe4e20a45
  tool_panel_section_label: Species abundance
- name: pampa_communitymetrics
  owner: ecology
  revisions:
  - 2cd0a5a321c2
  - 5bd7ddd7601f
  - c67ece97d4b1
  - ddd5b2e74b8b
  tool_panel_section_label: Species abundance
- name: pampa_glmsp
  owner: ecology
  revisions:
  - 0778efa9eb2e
  - 6c14021f678e
  - 7a69e1c8ba46
  - c12897ba5f83
  tool_panel_section_label: Species abundance
- name: pampa_glmcomm
  owner: ecology
  revisions:
  - 44b9069775ca
  - 8db02073b671
  - b40fecef616b
  - f0dc3958e65d
  tool_panel_section_label: Species abundance
- name: pampa_plotglm
  owner: ecology
  revisions:
  - 3ab852a7ff53
  - 5ddca052c314
  - c448e026f122
  tool_panel_section_label: Species abundance
- name: stoc_maketable
  owner: ecology
  revisions:
  - 22a784d2b0e0
  - af4987066235
  tool_panel_section_label: Species abundance
- name: stoc_filteringsp
  owner: ecology
  revisions:
  - 2e45ae3b297a
  - fd0687e91bf6
  tool_panel_section_label: Species abundance
- name: stoc_mainglm
  owner: ecology
  revisions:
  - a961be0a964f
  - df3ce23d0d23
  tool_panel_section_label: Species abundance
- name: stoc_mainglm_group
  owner: ecology
  revisions:
  - 06a11044e089
  - 8f953c35c787
  tool_panel_section_label: Species abundance
- name: stoc_trend_indic
  owner: ecology
  revisions:
  - 5c244408661f
  - 916b49d725ba
  tool_panel_section_label: Species abundance
- name: regionalgam_ab_index
  owner: ecology
  revisions:
  - d0ee713d4758
  tool_panel_section_label: Species abundance
- name: regionalgam_plot_trend
  owner: ecology
  revisions:
  - 58ecd15e6836
  tool_panel_section_label: Species abundance
- name: regionalgam_gls_adjusted
  owner: ecology
  revisions:
  - e2bff90af491
  tool_panel_section_label: Species abundance
- name: regionalgam_glmmpql
  owner: ecology
  revisions:
  - f3e1b6d244a6
  tool_panel_section_label: Species abundance
- name: regionalgam_autocor_acf
  owner: ecology
  revisions:
  - b416a363a2d5
  tool_panel_section_label: Species abundance
- name: regionalgam_flight_curve
  owner: ecology
  revisions:
  - fff507f00b2b
  tool_panel_section_label: Species abundance
- name: regionalgam_gls
  owner: ecology
  revisions:
  - a79f5f0f17ad
  tool_panel_section_label: Species abundance
- name: tool_anonymization
  owner: ecology
  revisions:
  - 726a387cfdc2
  tool_panel_section_label: Biodiversity data exploration
- name: ecology_beta_diversity
  owner: ecology
  revisions:
  - fb7b2cbd80bb
  tool_panel_section_label: Biodiversity data exploration
- name: ecology_homogeneity_normality
  owner: ecology
  revisions:
  - 3df8937fd6fd
  tool_panel_section_label: Biodiversity data exploration
- name: ecology_link_between_var
  owner: ecology
  revisions:
  - 8e8867bf491a
  tool_panel_section_label: Biodiversity data exploration
- name: ecology_presence_abs_abund
  owner: ecology
  revisions:
  - 4ed07d2d442b
  tool_panel_section_label: Biodiversity data exploration
- name: ecology_stat_presence_abs
  owner: ecology
  revisions:
  - 9a2e0195bb43
  tool_panel_section_label: Biodiversity data exploration
- name: cb_div
  owner: ecology
  revisions:
  - 5b31641e6d30
  - abc8da8c12ba
  tool_panel_section_label: Biodiversity data exploration
- name: cb_dissim
  owner: ecology
  revisions:
  - 7e6cc3da1189
  - 8dc082da41c1
  - ffaa9a71b2d2
  tool_panel_section_label: Compute indicators for turnover boulders fields
- name: cb_ivr
  owner: ecology
  revisions:
  - 8c6142630659
  - b67730406f1b
  - bcbad4f83dec
  tool_panel_section_label: Compute indicators for turnover boulders fields
- name: sample_seqs
  owner: peterjc
  revisions:
  - 7c40a1fbc82e
  - bdaefd241921
  tool_panel_section_label: Filter and Sort
- name: xmlstarlet
  owner: ecology
  revisions:
  - 4a9ac1df3278
  tool_panel_section_label: Convert Formats
- name: datamash_ops
  owner: iuc
  revisions:
  - 419027d822d6
  - 4c07ddedc198
  - 562f3c677828
  - 746e8e4bf929
  tool_panel_section_label: Join, Subtract and Group
- name: datamash_reverse
  owner: iuc
  revisions:
  - 0f1724dd59d2
  - 17e3b698dd52
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  - f198773344e4
  tool_panel_section_label: Join, Subtract and Group
- name: datamash_transpose
  owner: iuc
  revisions:
  - 22c2a1ac7ae3
  - 374cb875d38a
  - a513e3fbb4c5
  - ac092723240d
  - ba0c40780ecf
  tool_panel_section_label: Join, Subtract and Group
- name: collection_column_join
  owner: iuc
  revisions:
  - 071084070619
  - 3ddd99c7efee
  tool_panel_section_label: Join, Subtract and Group
- name: numeric_clustering
  owner: bgruening
  revisions:
  - a3fd214e7555
  tool_panel_section_label: Statistics
- name: text_processing
  owner: bgruening
  revisions:
  - 0a8c6b61f0f4
  - 12615d397df7
  - d698c222f354
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  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 02026300aa45
  - 13b6f0007d9e
  - 427903d47026
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  tool_panel_section_label: Text Manipulation
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  - 1ee282794de3
  - 654b3a274ed5
  tool_panel_section_label: FASTA/FASTQ
- name: split_file_on_column
  owner: bgruening
  revisions:
  - 37a53100b67e
  - b60f2452580e
  - d4b5b70e82cb
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  tool_panel_section_label: Text Manipulation
- name: merge_cols
  owner: devteam
  revisions:
  - ae7843d06f8f
  - f2aac0c5c60d
  tool_panel_section_label: Text Manipulation
- name: coverage
  owner: devteam
  revisions:
  - 4ef9819dc7fb
  - e3363e087468
  tool_panel_section_label: Text Manipulation
- name: merge
  owner: devteam
  revisions:
  - 381cd27bf67a
  - debffd27642d
  tool_panel_section_label: Text Manipulation
- name: intersect
  owner: devteam
  revisions:
  - 33b3f3688db4
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  tool_panel_section_label: Text Manipulation
- name: join
  owner: devteam
  revisions:
  - 718d04143c31
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  tool_panel_section_label: Text Manipulation
- name: subtract
  owner: devteam
  revisions:
  - 0145969324c4
  - 0427ca314f3d
  tool_panel_section_label: Operate on Genomic Intervals
- name: subtract_query
  owner: devteam
  revisions:
  - ff3901618482
  tool_panel_section_label: Text Manipulation
- name: unique
  owner: bgruening
  revisions:
  - 7ce75adb93be
  tool_panel_section_label: Text Manipulation
- name: reshape2_melt
  owner: iuc
  revisions:
  - 317ed0ee8bf2
  tool_panel_section_label: Text Manipulation
- name: reshape2_cast
  owner: iuc
  revisions:
  - d3b66a3a08ca
  tool_panel_section_label: Text Manipulation
- name: add_value
  owner: devteam
  revisions:
  - 023f0a3760b3
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  tool_panel_section_label: Text Manipulation
- name: jq
  owner: iuc
  revisions:
  - 5ff75eb1a893
  tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
  owner: devteam
  revisions:
  - 2e9f3b6ebfbc
  tool_panel_section_label: Text Manipulation
- name: flanking_features
  owner: devteam
  revisions:
  - 9f12b7e500f1
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  tool_panel_section_label: Text Manipulation
- name: cluster
  owner: devteam
  revisions:
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  tool_panel_section_label: Operate on Genomic Intervals
- name: get_flanks
  owner: devteam
  revisions:
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  tool_panel_section_label: Text Manipulation
- name: complement
  owner: devteam
  revisions:
  - 38c8bb402872
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  tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
  owner: devteam
  revisions:
  - 2cedec3759e4
  - 9c5ff4695c97
  tool_panel_section_label: Operate on Genomic Intervals
- name: dna_filtering
  owner: devteam
  revisions:
  - 549d2cb4c6f2
  tool_panel_section_label: Text Manipulation
- name: column_order_header_sort
  owner: iuc
  revisions:
  - 6ae9724caf4d
  tool_panel_section_label: Text Manipulation
- name: column_remove_by_header
  owner: iuc
  revisions:
  - 2040e4c2750a
  - 372967836e98
  tool_panel_section_label: Text Manipulation
- name: metagenomeseq_normalization
  owner: iuc
  revisions:
  - d16f7cc26516
  tool_panel_section_label: Text Manipulation
- name: gff3_rebase
  owner: iuc
  revisions:
  - 238981ed43b7
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  tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
  owner: bgruening
  revisions:
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  tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
  owner: peterjc
  revisions:
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  tool_panel_section_label: Filter and Sort
- name: transformation
  owner: ethevenot
  revisions:
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  tool_panel_section_label: Metabolomics
- name: anova
  owner: lecorguille
  revisions:
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  tool_panel_section_label: Statistics
- name: heatmap
  owner: ethevenot
  revisions:
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  tool_panel_section_label: Metabolomics
- name: univariate
  owner: ethevenot
  revisions:
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  tool_panel_section_label: Metabolomics
- name: multivariate
  owner: ethevenot
  revisions:
  - 5526f8258e8a
  tool_panel_section_label: Metabolomics
- name: biosigner
  owner: ethevenot
  revisions:
  - fa80bd02055f
  tool_panel_section_label: Metabolomics
- name: seq_composition
  owner: peterjc
  revisions:
  - 13be788233da
  tool_panel_section_label: Statistics
- name: t_test_two_samples
  owner: devteam
  revisions:
  - c2ffc9885b5a
  tool_panel_section_label: Statistics
- name: plot_from_lda
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: mine
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: lda_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: count_gff_features
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: correlation
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: venn_list
  owner: peterjc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: scatterplot
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: histogram
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: gmaj
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: xy_plot
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: draw_stacked_barplots
  owner: devteam
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_pca
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: pygenometracks
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_violin
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap2
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_point
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: ggplot2_histogram
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: tsne
  owner: iuc
  revisions:
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  tool_panel_section_label: Graph/Display Data
- name: best_regression_subsets
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: principal_component_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
  owner: devteam
  revisions:
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  tool_panel_section_label: Statistics
- name: sklearn_svm_classifier
  owner: bgruening
  revisions:
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  tool_panel_section_label: Machine Learning
- name: sklearn_sample_generator
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_searchcv
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_build_pipeline
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_pairwise_metrics
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_nn_classifier
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_numeric_clustering
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_ensemble
  owner: bgruening
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  tool_panel_section_label: Machine Learning
- name: sklearn_feature_selection
  owner: bgruening
  revisions:
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  tool_panel_section_label: Machine Learning
- name: sklearn_data_preprocess
  owner: bgruening
  revisions:
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  tool_panel_section_label: Machine Learning
- name: sklearn_clf_metrics
  owner: bgruening
  revisions:
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  tool_panel_section_label: Machine Learning
- name: sklearn_regression_metrics
  owner: bgruening
  revisions:
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  tool_panel_section_label: Data and Metadata Management
- name: ecoregion_geonearestneighbor
  owner: ecology
  revisions:
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  tool_panel_section_label: Ecoregionalization
- name: ecoregion_brt_analysis
  owner: ecology
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  tool_panel_section_label: Ecoregionalization
- name: ecoregion_taxa_seeker
  owner: ecology
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  tool_panel_section_label: Ecoregionalization
- name: ecoregion_eco_map
  owner: ecology
  revisions:
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  tool_panel_section_label: Ecoregionalization
- name: ecoregion_cluster_estimate
  owner: ecology
  revisions:
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  tool_panel_section_label: Ecoregionalization
- name: ecoregion_clara_cluster
  owner: ecology
  revisions:
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  tool_panel_section_label: Ecoregionalization
- name: map_shp
  owner: ecology
  revisions:
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  tool_panel_section_label: Indicators from geometric mean
- name: mean_geom
  owner: ecology
  revisions:
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  tool_panel_section_label: Indicators from geometric mean
- name: bar_plot
  owner: ecology
  revisions:
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  tool_panel_section_label: Indicators from geometric mean
- name: interpolation_run_idw_interpolation
  owner: ecology
  revisions:
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  tool_panel_section_label: GIS Data Handling
- name: otb_band_math
  owner: ecology
  revisions:
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  tool_panel_section_label: GIS Data Handling
- name: otb_mean_shift_smoothing
  owner: ecology
  revisions:
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  tool_panel_section_label: GIS Data Handling
- name: zoo_project_ogc_api_processes
  owner: ecology
  revisions:
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  tool_panel_section_label: GIS Data Handling
- name: aquainfra_importer
  owner: ecology
  revisions:
  - cc18c3bf2666
  tool_panel_section_label: Get Data
- name: iabiodiv_smartbiodiv_med_environ
  owner: ecology
  revisions:
  - b79faea33a8a
  - ca00b2eabdf3
  - f82f266381be
  tool_panel_section_label: Get Data