tests.yaml

name: tests

on:
  push:
    paths-ignore:
      - "README.md"
      - "docs/**"
      - "CHANGELOG.md"

  pull_request:
    paths-ignore:
      - "README.md"
      - "docs/*"
      - "CHANGELOG.md"

jobs:
  build_biopandas:
    runs-on: ubuntu-latest
    # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
    defaults:
      run:
        shell: bash -l {0}

    strategy:
      matrix:
        python-version: [3.7, 3.8, 3.9, "3.10", 3.11]
    steps:
      - name: Checkout repository
        uses: actions/checkout@v3
        # See: https://github.com/marketplace/actions/setup-miniconda
      - name: Setup miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          miniforge-variant: Mambaforge
          conda-channels: conda-forge
          python-version: ${{ matrix.python-version }}
          use-mamba: true
      - name: Install BioPandas
        run: pip install -e .
      - name: Install Dev Dependencies
        run: pip install mmtf-python numpy scipy pandas pytest looseversion importlib_resources
      - name: Run unit tests and generate coverage report
        run: pytest -s -v