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config.yaml: (Bioconductor, R) mapping for Bioconductor 1.0-1.5? #96

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HenrikBengtsson opened this issue Apr 16, 2021 · 3 comments · May be fixed by #97
Open

config.yaml: (Bioconductor, R) mapping for Bioconductor 1.0-1.5? #96

HenrikBengtsson opened this issue Apr 16, 2021 · 3 comments · May be fixed by #97

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@HenrikBengtsson
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The config.yaml file specifies (Bioconductor, R) mappings for Bioconductor (>= 1.6);

r_ver_for_bioc_ver:
"1.6": "2.1"
"1.7": "2.2"

However, https://github.com/Bioconductor/bioconductor.org/blob/master/content/about/release-announcements.md provides such mappings from Bioconductor 1.0:

Release Date Software packages R
1.6 May 18, 2005 123 2.1
1.5 October 25, 2004 100 2.0
1.4 May 17, 2004 81 1.9
1.3 October 30, 2003 49 1.8
1.2 May 29, 2003 30 1.7
1.1 November 19, 2002 20 1.6
1.0 May 1, 2002 15 1.5

Is there a reason for the latter being left out from the config.yaml file? If not, I can do a PR if you'd like.

@mtmorgan
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I can't think of a good reason why the config.yaml file couldn't be extended in this way. Probably there is infrastructure that is supported at 1.6 and beyond (biocLite?) but that seems like ancient history...

@HenrikBengtsson
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Thanks. I've created PR #97 that fills the gap.

@lshep
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lshep commented Apr 19, 2021

The S3 archive of packages has Bioc 1.8 and greater. The release announcements only have from Bioconductor 1.5 and there is a mechanism for download for (at least my attempt at one of) the packages. I looked at aCGH release in Bioconductor 1.5 and there is a source tarball downloaded. The landing pages and where we store package archives I believe changed over time.
I'm not sure if we could even get versions of lower than Bioconductor 1.5 since there doesn't seem to be landing pages or any reference to the package versions, or what packages were released under those releases, to know which to download. Did we still want to include those in the configuration anyways @mtmorgan .

lshep pushed a commit that referenced this issue Aug 24, 2023
* Fixed breadcrumbs

Added breadcrumb chevron back in, and changed to show inside hero instead of content when one exists

* Added check in case there is a hero
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3 participants