Fix: Better first_point fix #604
Annotations
142 errors and 1 warning
tests/test_algo.py.test_TMDApicalAlgo:
tests/test_algo.py#L228
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
tests/test_algo.py.test_TMDGradientAlgo:
tests/test_algo.py#L284
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L619
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a13efb80>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a13efb80> = diff('/tmp/tmp1xk2w9citest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
tests/test_neuron_functional.py.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L284
AssertionError:
Arrays are not almost equal to 5 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 165.69951562
Max relative difference: 3.15924248
x: array([ -4.75533, 174.88641, -9.35779], dtype=float32)
y: array([-170.45485, 42.04766, -26.37539])
|
tests/test_neuron_functional.py.test_axon_grower:
tests/test_neuron_functional.py#L322
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb492490>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb492490> = diff('/tmp/tmpr7ggz7rftest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_axon_grower_absolute.h5')
|
tests/test_neuron_functional.py.test_basic_grower:
tests/test_neuron_functional.py#L403
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb442970>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb442970> = diff('/tmp/tmp0fmozf4btest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
tests/test_neuron_functional.py.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L423
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 4.68638051
Max relative difference: 78.82940394
x: array([[-0.511599, 9.385795, 7.817605],
[-9.209658, 3.399985, 2.019685],
[ 8.413467, 3.845892, 4.346673],
[-1.759138, 12.613012, 0.826259]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L457
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb46ba30>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb46ba30> = diff('/tmp/tmpr0h7h2kvtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
tests/test_morphmath_bifurcation.py.test_get_bif_directional:
tests/test_morphmath_bifurcation.py#L24
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 2 / 6 (33.3%)
Max absolute difference: 1.
Max relative difference: 1.
x: array([[0., 1., 0.],
[0., 1., 0.]])
y: array([[0., 1., 0.],
[0., 0., 1.]])
|
tests/test_soma_grower.py.test_soma_grower:
tests/test_soma_grower.py#L436
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 9 (66.7%)
Max absolute difference: 2.637164
Max relative difference: 0.29820755
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.161602, -7.105966, 13.00619 ],
[-1.290905, -6.206221, 12.927537]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L629
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a1348a90>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a1348a90> = diff('/tmp/tmpuzsx9so6test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L467
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb524070>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb524070> = diff('/tmp/tmpl36x7wqwtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L478
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb446be0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb446be0> = diff('/tmp/tmp9t1hbdkztest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L640
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a0e839d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a0e839d0> = diff('/tmp/tmpkzd8xp1mtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L527
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c2ebb80>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c2ebb80> = diff('/tmp/tmp4r_qriq2test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L489
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb456ca0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb456ca0> = diff('/tmp/tmp5o4jdbswtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L537
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c0820d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c0820d0> = diff('/tmp/tmpld83km9wtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L721
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb1f6220>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb1f6220> = diff('/tmp/tmpkzgfw1kktest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L651
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a12afdc0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a12afdc0> = diff('/tmp/tmplgl3v4v2test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L548
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c26c3d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c26c3d0> = diff('/tmp/tmplvlyvhmttest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L559
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c24d220>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c24d220> = diff('/tmp/tmpdvko6mistest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L732
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb307940>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb307940> = diff('/tmp/tmpfsb3z_zstest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
tests/astrocyte/test_space_colonization.py.test_fallback_strategy:
tests/astrocyte/test_space_colonization.py#L112
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0
Mismatched elements: 2 / 3 (66.7%)
Max absolute difference: 2.
Max relative difference: 2.
x: array([0, 1, 1])
y: array([ 0., 0., -1.])
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L665
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a1320970>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a1320970> = diff('/tmp/tmpo1i7l21ptest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L573
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c09f970>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c09f970> = diff('/tmp/tmpnn4ex89ytest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L743
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7effbb537640>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7effbb537640> = diff('/tmp/tmpjss98_c2test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L675
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a0eb89a0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a0eb89a0> = diff('/tmp/tmpab0e4flutest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
tests/test_neuron_functional.py.test_with_rng:
tests/test_neuron_functional.py#L583
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c3e6910>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c3e6910> = diff('/tmp/tmplddbdmkqtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L594
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b245af7c0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b245af7c0> = diff('/tmp/tmpy5b0ojijtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
tests/test_neuron_functional.py.test_skip_preprocessing:
tests/test_neuron_functional.py#L686
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a10f0b20>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a10f0b20> = diff('/tmp/tmpp1jeepqgtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L605
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c260dc0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f3b1c260dc0> = diff('/tmp/tmpjorp4hfotest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
tests/test_neuron_functional.py.test_skip_rng_and_preprocessing:
tests/test_neuron_functional.py#L697
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a0e8eaf0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a0e8eaf0> = diff('/tmp/tmpz3q_lseztest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
tests/test_neuron_functional.py.test_default:
tests/test_neuron_functional.py#L711
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fb3a12d63a0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fb3a12d63a0> = diff('/tmp/tmputd50i81test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
tests (3.8, min_versions)
Process completed with exit code 1.
|
test_algo.test_TMDApicalAlgo:
tests/test_algo.py#L79
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
test_algo.test_TMDGradientAlgo:
tests/test_algo.py#L79
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
test_neuron_functional.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L297
AssertionError:
Arrays are not almost equal to 5 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 165.69951562
Max relative difference: 3.15924248
x: array([ -4.75533, 174.88641, -9.35779], dtype=float32)
y: array([-170.45485, 42.04766, -26.37539])
|
test_morphmath_bifurcation.test_get_bif_directional:
tests/test_morphmath_bifurcation.py#L26
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 2 / 6 (33.3%)
Max absolute difference: 1.
Max relative difference: 1.
x: array([[0., 1., 0.],
[0., 1., 0.]])
y: array([[0., 1., 0.],
[0., 0., 1.]])
|
TestBioRatL5Tpc1.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe3973ba2d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe3973ba2d0> = diff('/tmp/tmpw441ojcatest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
test_neuron_functional.test_axon_grower:
tests/test_neuron_functional.py#L132
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635ba07e50>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635ba07e50> = diff('/tmp/tmpvfzpgvbatest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_axon_grower_absolute.h5')
|
TestPathGrower.test_skip_preprocessing:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed5ab50>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed5ab50> = diff('/tmp/tmpi4yrdg_vtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
test_neuron_functional.test_basic_grower:
tests/test_neuron_functional.py#L132
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635b979ad0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635b979ad0> = diff('/tmp/tmpc2lqb78mtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
test_neuron_functional.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L446
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 4.68638051
Max relative difference: 78.82940394
x: array([[-0.511599, 9.385795, 7.817605],
[-9.209658, 3.399985, 2.019685],
[ 8.413467, 3.845892, 4.346673],
[-1.759138, 12.613012, 0.826259]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
TestPathGrower.test_default:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635ba3c210>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635ba3c210> = diff('/tmp/tmpg9tke98ztest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestPathGrower.test_with_rng:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635b8f4490>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635b8f4490> = diff('/tmp/tmpbgq42d2stest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestPathGrower.test_skip_rng_and_preprocessing:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed60350>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed60350> = diff('/tmp/tmpr951244ftest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestBioRatL5Tpc2.test_default:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe397532d50>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe397532d50> = diff('/tmp/tmpbz7_gilatest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc4.test_default:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635b861190>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635b861190> = diff('/tmp/tmpdlsdqgr4test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestGradientPathGrower.test_default:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed1d6d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed1d6d0> = diff('/tmp/tmpfk36s7sotest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestGradientPathGrower.test_with_rng:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed5ba90>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ed5ba90> = diff('/tmp/tmp1vosqg7rtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc2.test_with_rng:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe3972fdf10>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe3972fdf10> = diff('/tmp/tmpsikis4aotest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc4.test_with_rng:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635b8c8d10>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635b8c8d10> = diff('/tmp/tmpe0mufgtntest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestGradientPathGrower.test_skip_preprocessing:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1efdec10>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1efdec10> = diff('/tmp/tmphb9yqym3test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestGradientPathGrower.test_skip_rng_and_preprocessing:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ecef150>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1ecef150> = diff('/tmp/tmphsin0llltest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc2.test_skip_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe3950e4650>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe3950e4650> = diff('/tmp/tmpypzhw2smtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc4.test_skip_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635782c550>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635782c550> = diff('/tmp/tmpca6bwgnwtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc1.test_default:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1cadfd50>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1cadfd50> = diff('/tmp/tmpjcoht39dtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc4.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f635b8d4090>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f635b8d4090> = diff('/tmp/tmpql92idbutest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc2.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe397383550>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe397383550> = diff('/tmp/tmp3pg6b2ogtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc1.test_with_rng:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1cadd210>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1cadd210> = diff('/tmp/tmpl2az_xhhtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
test_soma_grower:
tests/test_soma_grower.py#L451
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 9 (66.7%)
Max absolute difference: 2.637164
Max relative difference: 0.29820755
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.161602, -7.105966, 13.00619 ],
[-1.290905, -6.206221, 12.927537]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
TestBioRatL5Tpc3.test_default:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe39738ea10>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe39738ea10> = diff('/tmp/tmp9u42m49vtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc1.test_skip_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f1e1c873a10>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f1e1c873a10> = diff('/tmp/tmpphtdzo3utest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
test_space_colonization.test_fallback_strategy:
tests/astrocyte/test_space_colonization.py#L134
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0
Mismatched elements: 2 / 3 (66.7%)
Max absolute difference: 2.
Max relative difference: 2.
x: array([0, 1, 1])
y: array([ 0., 0., -1.])
|
TestBioRatL5Tpc3.test_with_rng:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe397414210>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe397414210> = diff('/tmp/tmp69uvszo5test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc3.test_skip_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe394ef7810>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe394ef7810> = diff('/tmp/tmp9nyrf4trtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc3.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7fe397577110>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7fe397577110> = diff('/tmp/tmp2n802vv1test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
test_algo.test_TMDApicalAlgo:
tests/test_algo.py#L79
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
test_algo.test_TMDGradientAlgo:
tests/test_algo.py#L79
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
test_morphmath_bifurcation.test_get_bif_directional:
tests/test_morphmath_bifurcation.py#L26
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 2 / 6 (33.3%)
Max absolute difference: 1.
Max relative difference: 1.
x: array([[0., 1., 0.],
[0., 1., 0.]])
y: array([[0., 1., 0.],
[0., 0., 1.]])
|
test_neuron_functional.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L297
AssertionError:
Arrays are not almost equal to 5 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 165.69951562
Max relative difference: 3.15924248
x: array([ -4.75533, 174.88641, -9.35779], dtype=float32)
y: array([-170.45485, 42.04766, -26.37539])
|
TestBioRatL5Tpc1.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cb8ae30>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cb8ae30> = diff('/tmp/tmp44l1zt2ztest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestPathGrower.test_skip_rng_and_preprocessing:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff7928a5630>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff7928a5630> = diff('/tmp/tmpp4do0qpptest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
test_neuron_functional.test_axon_grower:
tests/test_neuron_functional.py#L132
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c061b7f0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c061b7f0> = diff('/tmp/tmpqxd2kmpbtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_axon_grower_absolute.h5')
|
test_neuron_functional.test_basic_grower:
tests/test_neuron_functional.py#L132
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c08eccd0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c08eccd0> = diff('/tmp/tmpdjb3otdutest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
test_neuron_functional.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L446
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 4.68638051
Max relative difference: 78.82940394
x: array([[-0.511599, 9.385795, 7.817605],
[-9.209658, 3.399985, 2.019685],
[ 8.413467, 3.845892, 4.346673],
[-1.759138, 12.613012, 0.826259]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
TestPathGrower.test_default:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c0940040>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c0940040> = diff('/tmp/tmpf0w03j_7test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestGradientPathGrower.test_default:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff7b84f70a0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff7b84f70a0> = diff('/tmp/tmp6ft3n6jwtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestPathGrower.test_with_rng:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c0618fd0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c0618fd0> = diff('/tmp/tmpvq5bl5s3test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestBioRatL5Tpc2.test_default:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cceb7f0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cceb7f0> = diff('/tmp/tmpeh5t2yqgtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestGradientPathGrower.test_with_rng:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff79284f640>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff79284f640> = diff('/tmp/tmpusfq3_zktest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestPathGrower.test_skip_preprocessing:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c08ec7f0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c08ec7f0> = diff('/tmp/tmpgjck419otest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestGradientPathGrower.test_skip_preprocessing:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff7928a5360>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff7928a5360> = diff('/tmp/tmpznb2bjuftest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc4.test_default:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c0addae0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c0addae0> = diff('/tmp/tmp1n6ot_5etest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc2.test_with_rng:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ccd3400>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ccd3400> = diff('/tmp/tmp_43nll_otest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestGradientPathGrower.test_skip_rng_and_preprocessing:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff7904e1150>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff7904e1150> = diff('/tmp/tmpzdvjt_dotest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc1.test_default:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff79285ba60>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff79285ba60> = diff('/tmp/tmpa9z51qjdtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc4.test_with_rng:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c0941c90>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c0941c90> = diff('/tmp/tmptrp4i7i4test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc2.test_skip_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cd3cee0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cd3cee0> = diff('/tmp/tmp2o6zsz6etest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc1.test_with_rng:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff7926114e0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff7926114e0> = diff('/tmp/tmp5xsiw95ptest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc4.test_skip_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c0add060>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c0add060> = diff('/tmp/tmpal1uhc8_test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc2.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ccf0640>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ccf0640> = diff('/tmp/tmp8y0g7ydmtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
test_soma_grower:
tests/test_soma_grower.py#L451
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 9 (66.7%)
Max absolute difference: 2.637164
Max relative difference: 0.29820755
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.161602, -7.105966, 13.00619 ],
[-1.290905, -6.206221, 12.927537]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
TestBioRatL5Tpc1.test_skip_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7ff7927c4e80>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7ff7927c4e80> = diff('/tmp/tmp4goimis8test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc4.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f95c0916f80>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f95c0916f80> = diff('/tmp/tmp72cm7n03test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc3.test_default:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ce4f3a0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ce4f3a0> = diff('/tmp/tmpryllwhrgtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
test_space_colonization.test_fallback_strategy:
tests/astrocyte/test_space_colonization.py#L134
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0
Mismatched elements: 2 / 3 (66.7%)
Max absolute difference: 2.
Max relative difference: 2.
x: array([0, 1, 1])
y: array([ 0., 0., -1.])
|
TestBioRatL5Tpc3.test_with_rng:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ccea950>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9ccea950> = diff('/tmp/tmp_b7dr66wtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc3.test_skip_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cbc1480>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cbc1480> = diff('/tmp/tmplq01810btest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc3.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cbc1480>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f7d9cbc1480> = diff('/tmp/tmp66vwg4pwtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
tests (3.10, latest_versions)
The job was canceled because "_3_8_min_versions" failed.
|
tests (3.10, latest_versions)
Process completed with exit code 255.
|
tests (3.11, latest_versions)
The job was canceled because "_3_8_min_versions" failed.
|
tests (3.11, latest_versions)
Process completed with exit code 1.
|
test_algo.test_TMDApicalAlgo:
tests/test_algo.py#L79
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
test_algo.test_TMDGradientAlgo:
tests/test_algo.py#L79
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 0.57735
Max relative difference: 1.
x: array([0, 1, 0])
y: array([0.57735, 0.57735, 0.57735])
|
test_neuron_functional.test_breaker_of_tmd_algo:
tests/test_neuron_functional.py#L297
AssertionError:
Arrays are not almost equal to 5 decimals
Mismatched elements: 3 / 3 (100%)
Max absolute difference: 165.69951562
Max relative difference: 3.15924248
x: array([ -4.75533, 174.88641, -9.35779], dtype=float32)
y: array([-170.45485, 42.04766, -26.37539])
|
test_morphmath_bifurcation.test_get_bif_directional:
tests/test_morphmath_bifurcation.py#L26
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 2 / 6 (33.3%)
Max absolute difference: 1.
Max relative difference: 1.
x: array([[0., 1., 0.],
[0., 1., 0.]])
y: array([[0., 1., 0.],
[0., 0., 1.]])
|
TestBioRatL5Tpc1.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa5409400>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa5409400> = diff('/tmp/tmpfrmpjycltest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
test_neuron_functional.test_axon_grower:
tests/test_neuron_functional.py#L132
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194cfa3e80>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194cfa3e80> = diff('/tmp/tmpyqidq3_etest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_axon_grower_absolute.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_axon_grower_absolute.h5')
|
test_neuron_functional.test_basic_grower:
tests/test_neuron_functional.py#L132
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194cf78430>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194cf78430> = diff('/tmp/tmpituz8q95test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/test_trunk_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'test_trunk_grower.h5')
|
TestPathGrower.test_skip_rng_and_preprocessing:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c22b5f70>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c22b5f70> = diff('/tmp/tmpacctt6s3test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
test_neuron_functional.test_basic_grower_with_generator:
tests/test_neuron_functional.py#L446
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 4.68638051
Max relative difference: 78.82940394
x: array([[-0.511599, 9.385795, 7.817605],
[-9.209658, 3.399985, 2.019685],
[ 8.413467, 3.845892, 4.346673],
[-1.759138, 12.613012, 0.826259]])
y: array([[ -0.731235, 7.604229, 11.173798],
[-13.377433, -1.286395, 2.933682],
[ 11.861422, -0.049414, 6.127999],
[ -2.380422, 12.54182 , 1.118073]])
|
TestPathGrower.test_default:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194cf617c0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194cf617c0> = diff('/tmp/tmpdkvidqk4test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestPathGrower.test_with_rng:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f196ee53e20>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f196ee53e20> = diff('/tmp/tmpf_kvhi4itest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestGradientPathGrower.test_default:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c25b2d90>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c25b2d90> = diff('/tmp/tmpmeq_ykqftest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc2.test_default:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa548e490>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa548e490> = diff('/tmp/tmpxmm4mosrtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestPathGrower.test_skip_preprocessing:
TestPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194d015310>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194d015310> = diff('/tmp/tmpxtiur0ywtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'path_grower.h5')
|
TestGradientPathGrower.test_with_rng:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c25ad430>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c25ad430> = diff('/tmp/tmpkzqxaip3test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc4.test_default:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194abbd460>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194abbd460> = diff('/tmp/tmp_nlc9giatest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestGradientPathGrower.test_skip_preprocessing:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c01b9b20>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c01b9b20> = diff('/tmp/tmpc3baq6hhtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc2.test_with_rng:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa2f69a90>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa2f69a90> = diff('/tmp/tmpn6deqrq2test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestGradientPathGrower.test_skip_rng_and_preprocessing:
TestGradientPathGrower#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c246ec70>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c246ec70> = diff('/tmp/tmpxfbpws0dtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/gradient_path_grower.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'gradient_path_grower.h5')
|
TestBioRatL5Tpc4.test_with_rng:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194cf61340>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194cf61340> = diff('/tmp/tmpejf9m0kitest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc1.test_default:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c246eb80>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c246eb80> = diff('/tmp/tmps248jwectest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc2.test_skip_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa53870d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa53870d0> = diff('/tmp/tmpwkwbi8uotest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc4.test_skip_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194ce34160>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194ce34160> = diff('/tmp/tmplhrd47zatest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
TestBioRatL5Tpc1.test_with_rng:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c24cd790>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c24cd790> = diff('/tmp/tmp87vk7ma3test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc2.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc2#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa2f698b0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa2f698b0> = diff('/tmp/tmprnx77vcctest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params2.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params2.h5')
|
TestBioRatL5Tpc4.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc4#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f194cfdc0d0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f194cfdc0d0> = diff('/tmp/tmpm1if3wf9test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params4.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params4.h5')
|
test_soma_grower:
tests/test_soma_grower.py#L451
AssertionError:
Arrays are not almost equal to 6 decimals
Mismatched elements: 6 / 9 (66.7%)
Max absolute difference: 2.637164
Max relative difference: 0.29820755
x: array([[-1.161602, -7.935147, 13.00619 ],
[-1.161602, -7.105966, 13.00619 ],
[-1.290905, -6.206221, 12.927537]], dtype=float32)
y: array([[-1.161602, -7.935147, 13.00619 ],
[-1.224638, -8.365755, 13.711984],
[-1.44443 , -8.843385, 14.457643]], dtype=float32)
|
TestBioRatL5Tpc1.test_skip_preprocessing:
TestBioRatL5Tpc1#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7f98c25d38b0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7f98c25d38b0> = diff('/tmp/tmpk06z3keltest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params1.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params1.h5')
|
TestBioRatL5Tpc3.test_default:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa32c7ee0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa32c7ee0> = diff('/tmp/tmpqj01oyf9test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
test_space_colonization.test_fallback_strategy:
tests/astrocyte/test_space_colonization.py#L134
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0
Mismatched elements: 2 / 3 (66.7%)
Max absolute difference: 2.
Max relative difference: 2.
x: array([0, 1, 1])
y: array([ 0., 0., -1.])
|
TestBioRatL5Tpc3.test_with_rng:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa5380760>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa5380760> = diff('/tmp/tmp62zyzqo4test_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc3.test_skip_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa327a460>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa327a460> = diff('/tmp/tmp3yznf_9wtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
TestBioRatL5Tpc3.test_skip_rng_and_preprocessing:
TestBioRatL5Tpc3#L1
AssertionError: assert not <morph_tool.morphio_diff.DiffResult object at 0x7feaa548efa0>
+ where <morph_tool.morphio_diff.DiffResult object at 0x7feaa548efa0> = diff('/tmp/tmp__3xzsjmtest_grower/test_output_neuron_.h5', '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5')
+ where '/home/runner/work/NeuroTS/NeuroTS/tests/data/expected_bio_rat_L5_TPC_B_with_params3.h5' = join('/home/runner/work/NeuroTS/NeuroTS/tests/data', 'expected_bio_rat_L5_TPC_B_with_params3.h5')
|
tests (3.9, latest_versions)
The job was canceled because "_3_8_min_versions" failed.
|
tests (3.9, latest_versions)
Process completed with exit code 255.
|
tests (3.8, latest_versions)
The job was canceled because "_3_8_min_versions" failed.
|
tests (3.8, latest_versions)
The operation was canceled.
|
tests (3.8, latest_versions)
ENOENT: no such file or directory, stat '/home/runner/work/NeuroTS/NeuroTS/.tox/py38/tmp/popen-gw0/test_defaultcurrent/bio_path_persistence_diagram.json'
|
tests (3.8, latest_versions)
Runner GitHub Actions 9 did not respond to a cancelation request with 00:05:00.
|
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tests-3.10-latest_versions
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tests-3.11-latest_versions
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27.5 MB |
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tests-3.8-min_versions
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tests-3.9-latest_versions
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