Documentation for starfiles

[jojoelfe]

This should add the starfile node to the documentation. I am still working on the tutorial, but figured I open the PR to see if the CI for the docs works correctly.

ALso included are some small fixes for relion import that I noticed while making a tutorial.

[codecov]

Codecov Report

Attention: Patch coverage is 37.50000% with 5 lines in your changes are missing coverage. Please review.

Project coverage is 77.66%. Comparing base (e18b144) to head (5f6b596).
Report is 17 commits behind head on main.

❗ Current head 5f6b596 differs from pull request most recent head 5f11a4d

Please upload reports for the commit 5f11a4d to get more accurate results.

Files	Patch %	Lines
molecularnodes/io/parse/star.py	37.50%	5 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #470      +/-   ##
==========================================
+ Coverage   75.70%   77.66%   +1.95%     
==========================================
  Files          41       40       -1     
  Lines        3742     3617     -125     
==========================================
- Hits         2833     2809      -24     
+ Misses        909      808     -101     

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[BradyAJohnston]

The docs build OK on my machine - I need to look into why they aren't auto-triggering a build for the PR.

[BradyAJohnston]

Now changed so that the docs will build & deploy on every PR :)

EDIT:
OK I remember why I disabled this - because there was an error with deploying to netlify from PRs that weren't mine. Will look into it

[BradyAJohnston]

OK for security reasons we can't have a preview deployment unless the PR is from me - but the docs now at least still build & report if successful.

[BradyAJohnston]

no rush on this - but I will be giving a tutorial to some CryoEM and CryoET people in a couple of weeks and would love to have a written tutorial for the starfile importing :)

[jojoelfe]

Hey, I am slowly coming back to things after traveling.

I think the tutorial for cryo-EM SPA is in fairly good shape. It would be great to have something similar for cryo-ET, but there the problem is to find good datasets. An new choice would be some data from the CZI portal (https://cryoetdataportal.czscience.com/), but they don't use starfiles, but a json format. Maybe thats trivial to implement, but I haven't looked at it carefully yet.

[BradyAJohnston]

Just put together an initial .ndjson parser in #493 if you wanted to take a look. If you can point out some good datasets to use as testing on that portal (I've had a look, but this isn't my field of expertise).