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Changelog

2.2.2 (2024-05-07)

Bug Fixes

  • create output xml folder if not exists and update snapshots (#176) (23192fa)

2.2.1 (2024-05-06)

Bug Fixes

2.2.0 (2024-04-08)

Features

  • add column conditiondate year for filtering in data shield (#169) (a3cc155)

2.1.5 (2024-03-27)

Bug Fixes

  • additional column for patid to keep pat identifier for joins, include new datadictionary (#165) (49ec635)

2.1.4 (2024-03-26)

Bug Fixes

  • do not use semicolon at the end of SQL query (#157) (b3805f3)
  • exchange pat identifier with actual id, handle empty conditiondate (#164) (08c6273)

Miscellaneous Chores

  • deps: update all non-major dependencies (#142) (77e9e83)
  • deps: update all non-major dependencies (#147) (833a09e)
  • deps: update all non-major dependencies (#149) (9242de3)
  • deps: update all non-major dependencies (#153) (03c1f4b)
  • deps: update docker.io/bitnami/kafka:3.6.0 docker digest to cff659c (#133) (35016c0)
  • deps: update docker.io/bitnami/kafka:3.6.1 docker digest to 80dfb40 (#151) (7693f07)
  • deps: update docker.io/bitnami/kafka:3.6.1 docker digest to b525405 (#156) (c96934d)
  • deps: update docker.io/library/postgres:15.5 docker digest to 15b7f8d (#154) (936b0b0)
  • deps: update docker.io/library/postgres:15.5 docker digest to 7415b9c (#134) (be76059)
  • deps: update docker.io/library/postgres:15.5 docker digest to 89d430f (#139) (92e7f35)
  • deps: update docker.io/library/postgres:16.1 docker digest to 09f23e0 (#155) (04d73fb)
  • deps: update docker.io/library/postgres:16.1 docker digest to 49c276f (#140) (f9ea488)
  • deps: update docker.io/obiba/opal:4.6 docker digest to 50abaa4 (#141) (db11236)
  • expose obds-to-fhir env vars (#148) (4f40596)

CI/CD

  • updated standard schedule to scan both build imges (#138) (8c5f067)

2.1.3 (2024-01-04)

Documentation

Miscellaneous Chores

  • bumps obds-to-fhir image (#136) (73b03ce)
  • deps: update docker.io/hapiproject/hapi docker tag to v6.10.1 (#132) (8cab8b8)
  • deps: update docker.io/obiba/opal:4.6 docker digest to 79782ac (#131) (ad52b39)
  • remove image digest since it seems to interfere with docker save and docker load (f6fdb59)

2.1.2 (2023-11-28)

Miscellaneous Chores

  • deps: update all non-major dependencies (#94) (3739ba2)

2.1.1 (2023-11-24)

Bug Fixes

  • update connector SQL query and related part in README.md (#126) (4332970)

Miscellaneous Chores

  • deps: updated pseudonymizer to v2.21.3 (#128) (41dbbc2)

2.1.0 (2023-11-21)

Features

  • age and entity groupings for datashield (#124) (c03d2d3)

Miscellaneous Chores

CI/CD

  • use reusable miracum workflows for ci (#123) (ff86902)

2.0.0 (2023-11-08)

⚠ BREAKING CHANGES

  • affects (default) names of all created and used Kafka topics

Features

  • renamed adt to obds (581311b)
  • renamed adt to obds - BREAKING CHANGE - renames all container images (9300032)

Miscellaneous Chores

1.6.2 (2023-10-12)

Miscellaneous Chores

  • deps: downgraded helm to create release (#113) (657bd67)

1.6.1 (2023-10-12)

Miscellaneous Chores

  • deps: updated fhir pseudonymizer and gateway to latest (#111) (3925bcc)

1.6.0 (2023-10-04)

Features

  • added a sample deployment for datashield/opal (#105) (d18fa12)
  • updated adtfhir-to-opal to produce uicc mapping, grouped uicc, age at diagnosis (#107) (3d223e8)

Miscellaneous Chores

  • added incomplete taskfile for demoing (0764e7a)
  • deps: update actions/checkout action to v4 (#106) (09a8064)
  • deps: update compose.onkoadt-to-fhir.yaml to use harbor image variant (#109) (9b546c0)
  • deps: update ghcr.io/miracum/kafka-fhir-to-server docker tag to v2 (#96) (032906b)
  • deps: update github-actions (#31) (51782af)
  • deps: update github-actions (major) (#60) (26c1666)
  • deps: update google-github-actions/release-please-action action to v3.7.12 (#108) (edeabf6)
  • fixed KRaft config for newest Kafka (#101) (84df54e)
  • unpin strimzi Operator Image for easier updates (f13faa8)
  • updated FHIR Pseudonymizer to v2.20.0 (#104) (66897d4)
  • use a smaller spark base image (#103) (862e124)

1.5.11 (2023-08-03)

Miscellaneous Chores

1.5.10 (2023-07-10)

Bug Fixes

  • set kafka cleanup policy to compact (#92) (531ff40)

1.5.9 (2023-07-09)

Bug Fixes

  • restart policy and output volume (16bd28d)

Miscellaneous Chores

  • deps: update all non-major dependencies (#89) (648b6f5)
  • deps: update ghcr.io/miracum/kafka-fhir-to-server docker tag to v1.2.7 (#90) (6d3a476)

1.5.8 (2023-07-06)

Miscellaneous Chores

  • deps: update all non-major dependencies (#85) (8c22423)
  • deps: update docker.io/library/python:3.11.4-slim docker digest to 364ee1a (#87) (f9b6946)
  • deps: update kafka-connect-image to v1.1.0 (af0a423)

CI/CD

  • release-please extra file fix (6f6e611)

1.5.7 (2023-06-27)

Miscellaneous Chores

  • deps: update all non-major dependencies (#81) (1b56665)
  • deps: update container-images (#82) (16dc67c)

1.5.6 (2023-06-20)

Bug Fixes

  • depend only on build for releases (1252348)

1.5.5 (2023-06-20)

Bug Fixes

  • re-structured compose files (1f9f591)

CI/CD

  • run tests only on PRs to keep the pipeline fast (a84d656)

1.5.4 (2023-06-20)

Miscellaneous Chores

  • deps: update all non-major dependencies (#73) (f070ed9)
  • deps: update ghcr.io/miracum/kafka-fhir-to-server docker tag to v1.2.6 (#78) (1a9c7bd)

1.5.3 (2023-06-13)

Miscellaneous Chores

  • deps: update container-images (#71) (b1a7f81)
  • deps: update docker.io/library/python:3.11.4-slim docker digest to 0f0fca2 (#75) (30b086b)

1.5.2 (2023-06-07)

Bug Fixes

1.5.1 (2023-06-05)

CI/CD

  • use custom cricketeer image and only build compose installer (#67) (cbe90d9)

1.5.0 (2023-06-04)

Features

  • added input data preprocessor to decompose sammelmeldung xmls (#38) (ef3a73e)
  • include decompose xml in compose installation (#66) (52c53b2)

Miscellaneous Chores

  • deps: update container-images (#61) (f125e2f)
  • deps: update ghcr.io/miracum/kafka-fhir-to-server docker tag to v1.2.4 (#63) (81047f7)
  • deps: update ghcr.io/miracum/kafka-fhir-to-server docker tag to v1.2.5 (#64) (1d34c23)

1.4.2 (2023-05-24)

Bug Fixes

  • use ghcr.io registry for onkoadt-to-fhir (#58) (a628a62)

1.4.1 (2023-05-23)

Miscellaneous Chores

  • deps: update all non-major dependencies (#55) (bb157b4)
  • deps: update container-images (#54) (f0d70a4)
  • deps: update harbor.miracum.org/streams-ume/onkoadt-to-fhir docker tag to v1.10.4 (#57) (e4f4e0f)

1.4.0 (2023-05-08)

Features

  • added onkostar db connector (787b21e)

Bug Fixes

  • anonymization to work with multiple identifier coding types (787b21e)
  • don't pin compose digests (#53) (787b21e)
  • un-pin compose images due to missing repo names when docker-saving (787b21e)

Miscellaneous Chores

1.3.1 (2023-05-08)

Bug Fixes

  • split artifacts into multiple to deal with file sizes (0edbcf2)

1.3.0 (2023-05-07)

Features

  • added compose-based deployment and k3s image import script (#47) (1b69d27)

Bug Fixes

  • not iterating over all images to download the air-gapped images (#45) (35f46c1)
  • use digests consistently (#48) (6ceee8d)

Miscellaneous Chores

  • deps: update container-images (#42) (6a88ad6)
  • deps: update container-images (#49) (74c02fd)
  • deps: update harbor.miracum.org/streams-ume/onkoadt-to-fhir docker tag to v1.10.0 (#46) (2fc9707)
  • deps: update harbor.miracum.org/streams-ume/onkoadt-to-fhir docker tag to v1.9.0 (#43) (dc1f1c8)

1.2.0 (2023-05-04)

Features

  • added docker-compose based installation method (#39) (1227a45)

Miscellaneous Chores

  • updated fhir gw to update pseudonymizer (#41) (c5c22d5)

1.1.2 (2023-05-02)

Bug Fixes

  • default to partition count of 1 and gzip compression (#35) (4574d7a)

Miscellaneous Chores

  • deps: update harbor.miracum.org/streams-ume/onkoadt-to-fhir docker tag to v1.8.1 (#37) (c9aa56b)

1.1.1 (2023-04-19)

Bug Fixes

  • added prerequisites chart to release-please extra-files (bdf2146)

1.1.0 (2023-04-19)

Features

  • added air-gapped installer workflow (#33) (32aaaf2)
  • added kafka bridge deployment (#29) (6bb2feb)
  • added support for deploying KafkaBridge (6bb2feb)
  • include fhir-gateway sub-chart and config to provide pseudonymization (#16) (8e9a503)

Documentation

  • use OCI chart in README and update version via release please (385708f)

CI/CD

  • fix megalinter complaints and added scorecards workflow (#10) (1be905e)
  • fixed cosign (#12) (2774c4f)

Miscellaneous Chores

  • add renovate.json (#4) (410f49b)
  • deps: update actions/checkout action to v3.4.0 (#9) (0ab830d)
  • deps: update actions/checkout action to v3.5.0 (#14) (04d8413)
  • deps: update actions/checkout action to v3.5.2 (#27) (86972d5)
  • deps: update github/codeql-action action to v2.2.7 (#11) (e920199)
  • deps: update github/codeql-action action to v2.2.8 (#13) (319b2e8)
  • deps: update github/codeql-action action to v2.2.9 (#17) (a11a505)
  • deps: update google-github-actions/release-please-action action to v3.7.6 (#19) (673372e)
  • deps: update google-github-actions/release-please-action action to v3.7.7 (#25) (8bd5be7)
  • deps: update harbor.miracum.org/streams-ume/onkoadt-to-fhir docker tag to v1.7.0 (#32) (0722f52)
  • deps: update helm release akhq to v0.24.0 (#21) (bf25c89)
  • deps: update helm release fhir-gateway to v6.0.5 (#23) (6885339)
  • deps: update helm release hapi-fhir-jpaserver to v0.11.1 (#5) (3c18bcc)
  • deps: update ossf/scorecard-action action to v2.1.3 (#20) (a8bac91)
  • deps: update oxsecurity/megalinter action to v6.20.1 (#6) (c3afbf4)
  • deps: update sigstore/cosign-installer action to v3.0.2 (#24) (d7f882b)
  • moved prerequisites in dedicated prerequsites chart (6bb2feb)
  • renovate: group dependency updates (6bb2feb)

1.0.0 (2023-03-09)

Features

  • first version of the diz-in-a-box package and test workflow (#1) (fd6d6bc)

Miscellaneous Chores

  • added LICENSE file (623a449)
  • added version.txt to trigger release please (f68b7d8)

CI/CD

  • downgrade cosign version (ba3eba2)
  • set release please token (dcd913e)