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docker-compose-all.yml
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docker-compose-all.yml
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x-python-image:
&python-image
python:3.10-alpine
x-python-version:
&python-version
python3.10
x-pyarrow-image:
&pyarrow-image
mira-nf:pyarrow-alpine
x-mira-nf-image:
&mira-nf-image
mira-nf:python3.10-alpine
x-data-volume:
&data-volume
type: bind
source: /home/snu3/Github/FLU_SC2_SEQUENCING
target: /data
services:
multiqc:
container_name: multiqc
image: mira-nf:multiqc-alpine
build:
context: .
dockerfile: multiqc/Dockerfile-multiqc
args:
python_image: *python-image
python_version: *python-version
multiqc_version: 1.19
restart: always
volumes:
- *data-volume
command: tail -f /dev/null
fastqc:
container_name: fastqc
image: mira-nf:fastqc-alpine
build:
context: .
dockerfile: fastqc/Dockerfile-fastqc
args:
python_image: *python-image
python_version: *python-version
fastqc_version: 0.12.1
restart: always
volumes:
- *data-volume
command: tail -f /dev/null
bbtools:
container_name: bbtools
image: mira-nf:bbtools-alpine
build:
context: .
dockerfile: bbtools/Dockerfile-bbtools
args:
python_image: *python-image
python_version: *python-version
restart: always
volumes:
- *data-volume
command: tail -f /dev/null
pyarrow:
container_name: pyarrow
image: *pyarrow-image
build:
context: .
dockerfile: pyarrow/Dockerfile-pyarrow
args:
python_image: *python-image
ARROW_VERSION: 17.0.0
restart: always
volumes:
- *data-volume
command: tail -f /dev/null
cutadapt:
container_name: cutadapt
image: mira-nf:cutadapt-alpine
build:
context: .
dockerfile: cutadapt/Dockerfile-cutadapt
args:
python_image: *pyarrow-image
python_version: *python-version
cutadapt_version: 4.4
depends_on:
- pyarrow
restart: always
volumes:
- *data-volume
command: tail -f /dev/null
mira-nf:
container_name: mira-nf
image: *mira-nf-image
build:
context: .
dockerfile: Dockerfile
args:
python_image: *pyarrow-image
python_version: *python-version
depends_on:
- multiqc
- fastqc
- bbtools
- cutadapt
- pyarrow
restart: always
volumes:
- *data-volume
command: tail -f /dev/null