diff --git a/pipeline/Project.toml b/pipeline/Project.toml index 764a5b874..2958c4778 100644 --- a/pipeline/Project.toml +++ b/pipeline/Project.toml @@ -21,16 +21,16 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" [compat] -ADTypes = "0.2" +ADTypes = "1.2" AbstractMCMC = "5.2" CSV = "0.10" Dagger = "0.18" -DataFramesMeta = "0.14" -Dates = "1.10" +DataFramesMeta = "0.15" +Dates = ">= 1.9" Distributions = "0.25" DocStringExtensions = "0.9" DrWatson = "2.15" JLD2 = "0.4" Plots = "1.40" Statistics = "1.10" -julia = "1.10" +julia = ">= 1.9" diff --git a/pipeline/test/end-to-end/test_prior_predictive.jl b/pipeline/test/end-to-end/test_prior_predictive.jl index 138eeb545..71f28254d 100644 --- a/pipeline/test/end-to-end/test_prior_predictive.jl +++ b/pipeline/test/end-to-end/test_prior_predictive.jl @@ -1,8 +1,7 @@ using Test @testset "run prior predictive modelling for random scenario" begin using DrWatson, EpiAware - quickactivate(@__DIR__(), "Analysis pipeline") - include(srcdir("EpiAwarePipeline.jl")) + quickactivate(@__DIR__(), "EpiAwarePipeline") using EpiAwarePipeline pipeline = RtwithoutRenewalPriorPipeline() diff --git a/pipeline/test/simulate/test_TruthSimulationConfig.jl b/pipeline/test/simulate/test_TruthSimulationConfig.jl index a31766be9..3b8114323 100644 --- a/pipeline/test/simulate/test_TruthSimulationConfig.jl +++ b/pipeline/test/simulate/test_TruthSimulationConfig.jl @@ -2,7 +2,7 @@ using Distributions, EpiAwarePipeline, EpiAware # Define a mock TruthSimulationConfig object for testing config = TruthSimulationConfig( - truth_process = fill(1.5, 10), gi_mean = 2.0, gi_std = 2.0) + truth_process = fill(1.5, 30), gi_mean = 2.0, gi_std = 2.0) # Test the simulate function result = simulate(config)