From fdb92f6b5761f0998633c91a6266ac6565581984 Mon Sep 17 00:00:00 2001
From: Kaitlyn Johnson <uox1@cdc.gov>
Date: Mon, 25 Mar 2024 17:36:00 +0000
Subject: [PATCH] remove extra files that should have been removed when we set
 up r cmd check CI

---
 .github/workflows/tests.yaml | 21 ---------------------
 ci/run/test-vignette.R       |  1 -
 ci/run/unit-tests.R          |  2 --
 ci/setup/install-cmdstan.R   |  2 --
 ci/setup/install-package.R   |  9 ---------
 5 files changed, 35 deletions(-)
 delete mode 100644 .github/workflows/tests.yaml
 delete mode 100644 ci/run/test-vignette.R
 delete mode 100644 ci/run/unit-tests.R
 delete mode 100644 ci/setup/install-cmdstan.R
 delete mode 100644 ci/setup/install-package.R

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
deleted file mode 100644
index 1c91db43..00000000
--- a/.github/workflows/tests.yaml
+++ /dev/null
@@ -1,21 +0,0 @@
-name: Run Tests
-
-on:
-  pull_request:
-  push:
-    branches: [main]
-
-jobs:
-  tests:
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@v4
-    - uses: r-lib/actions/setup-r@v2
-      with:
-        r-version: '4.3.2'
-    - run: sudo apt install -y pandoc git pandoc-citeproc make libssl-dev libfreetype6-dev libfribidi-dev libharfbuzz-dev libfontconfig1-dev libudunits2-dev zlib1g-dev libcurl4-openssl-dev libxml2-dev libgit2-dev libjpeg-dev libpng-dev libtiff-dev libicu-dev libglpk-dev libgmp3-dev libgdal-dev gdal-bin libgeos-dev libproj-dev libsqlite3-dev
-    - uses: ./.github/actions/setup-r
-    - run: Rscript ci/run/unit-tests.R
-      shell: bash
-#    - run: Rscript ci/run/test-vignette.R
-#      shell: bash
diff --git a/ci/run/test-vignette.R b/ci/run/test-vignette.R
deleted file mode 100644
index f0b305cd..00000000
--- a/ci/run/test-vignette.R
+++ /dev/null
@@ -1 +0,0 @@
-rmarkdown::render("cfaforecastrenewalww/vignettes/toy_data_vignette.Rmd")
diff --git a/ci/run/unit-tests.R b/ci/run/unit-tests.R
deleted file mode 100644
index 6a2999f7..00000000
--- a/ci/run/unit-tests.R
+++ /dev/null
@@ -1,2 +0,0 @@
-library(devtools)
-devtools::test("cfaforecastrenewalww")
diff --git a/ci/setup/install-cmdstan.R b/ci/setup/install-cmdstan.R
deleted file mode 100644
index 5bf34cf8..00000000
--- a/ci/setup/install-cmdstan.R
+++ /dev/null
@@ -1,2 +0,0 @@
-options(repos = c(CRAN = "https://packagemanager.posit.co/cran/__linux__/jammy/latest"))
-install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))
diff --git a/ci/setup/install-package.R b/ci/setup/install-package.R
deleted file mode 100644
index e5e72d53..00000000
--- a/ci/setup/install-package.R
+++ /dev/null
@@ -1,9 +0,0 @@
-options(repos = c(CRAN = "https://packagemanager.posit.co/cran/__linux__/jammy/latest"))
-
-library(cmdstanr)
-check_cmdstan_toolchain()
-install_cmdstan(cores = 2)
-
-install.packages("remotes")
-install.packages("devtools")
-remotes::install_local("cfaforecastrenewalww", upgrade = TRUE)