diff --git a/R/3_test_spatial_models.R b/R/3_test_spatial_models.R index 9782fbe..d922465 100644 --- a/R/3_test_spatial_models.R +++ b/R/3_test_spatial_models.R @@ -46,13 +46,13 @@ test_model_date_shuffle( raw_hospital_counts = hospital_counts, #Raw hospital data raw_ww_data = ww_data, #Raw wastewater data pop_data, #Population by catchment - sites = "1;7;22", #If listing individual sites, combine with ; (i.e. 2;3;4) + sites = "all", #If listing individual sites, combine with ; (i.e. 2;3;4) WA_population = 7786000, #WA population forecast_horizon = 28, #Number of days you are going to predict to spatial = facility_distance, #Spatial data values calibration_time = 90, #How long we want to calibrate for repeats = 10, #How many shuffles of data we want to repeat this on - savename = "rapid_test", #Savename modifier for file output + savename = "full_run", #Savename modifier for file output fit_options = fit_this ) diff --git a/figs/date_shuffle/full_run/key.csv b/figs/date_shuffle/full_run/key.csv new file mode 100644 index 0000000..0ec6508 --- /dev/null +++ b/figs/date_shuffle/full_run/key.csv @@ -0,0 +1,11 @@ +"sites","forecast_horizon","calibration_time","repeats","savename","random_dates" +"all",28,90,10,"full_run",2022-12-14 +"all",28,90,10,"full_run",2022-11-27 +"all",28,90,10,"full_run",2023-03-24 +"all",28,90,10,"full_run",2022-11-30 +"all",28,90,10,"full_run",2023-04-02 +"all",28,90,10,"full_run",2022-12-19 +"all",28,90,10,"full_run",2022-12-10 +"all",28,90,10,"full_run",2022-11-25 +"all",28,90,10,"full_run",2022-12-11 +"all",28,90,10,"full_run",2023-01-23 diff --git a/figs/date_shuffle/rapid_test/key.csv b/figs/date_shuffle/rapid_test/key.csv index 31c564e..e60a99b 100644 --- a/figs/date_shuffle/rapid_test/key.csv +++ b/figs/date_shuffle/rapid_test/key.csv @@ -1,11 +1,11 @@ "sites","forecast_horizon","calibration_time","repeats","savename","random_dates" -"1;7;22",28,90,10,"rapid_test",2023-01-08 -"1;7;22",28,90,10,"rapid_test",2023-04-17 -"1;7;22",28,90,10,"rapid_test",2023-03-10 -"1;7;22",28,90,10,"rapid_test",2023-04-12 -"1;7;22",28,90,10,"rapid_test",2022-12-14 -"1;7;22",28,90,10,"rapid_test",2022-11-15 -"1;7;22",28,90,10,"rapid_test",2022-12-22 -"1;7;22",28,90,10,"rapid_test",2023-01-25 -"1;7;22",28,90,10,"rapid_test",2022-11-22 -"1;7;22",28,90,10,"rapid_test",2023-02-15 +"all",28,90,10,"rapid_test",2023-01-08 +"all",28,90,10,"rapid_test",2023-04-17 +"all",28,90,10,"rapid_test",2023-03-10 +"all",28,90,10,"rapid_test",2023-04-12 +"all",28,90,10,"rapid_test",2022-12-14 +"all",28,90,10,"rapid_test",2022-11-15 +"all",28,90,10,"rapid_test",2022-12-22 +"all",28,90,10,"rapid_test",2023-01-25 +"all",28,90,10,"rapid_test",2022-11-22 +"all",28,90,10,"rapid_test",2023-02-15