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Create beast-beagle-with-GPU.def #8

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33 changes: 33 additions & 0 deletions software/BEAST-BEAGLE/beast-beagle-with-GPU.def
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Bootstrap: docker
From: nvidia/cuda:12.1.1-devel-ubuntu22.04

# Base container taken from: https://hub.docker.com/r/nvidia/cuda/tags?page=1&name=12.1.1-devel

%post
# Install Beagle instructions: https://github.com/beagle-dev/beagle-lib/wiki/LinuxInstallInstructions

# Install dependencies
apt update -y
# apt install -y build-essential gcc cmake autoconf automake libtool subversion pkg-config git openjdk-11-jdk
apt install -y cmake build-essential autoconf automake libtool git pkg-config openjdk-11-jdk
# Install Beagle
cd /opt
git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git
cd beagle-lib
mkdir build
cd build
cmake -DBUILD_OPENCL=OFF ..
make install

# Install Beast2
# Instructions: https://github.com/CompEvol/beast2/releases
apt install -y wget
cd /opt
wget https://github.com/CompEvol/beast2/releases/download/v2.7.6/BEAST.v2.7.6.Linux.x86.tgz
gzip -d BEAST.v2.7.6.Linux.x86.tgz
tar xvf BEAST.v2.7.6.Linux.x86.tar

%environment
export LD_LIBRARY_PATH=/opt/beagle-lib:$LD_LIBRARY_PATH
export PATH=/opt/beast/bin:$PATH
export PATH=$PATH:/opt/beagle-lib