Skip to content
@CNAG-Biomedical-Informatics

CNAG Biomedical Informatics

README.md

Welcome to CNAG Biomedical Informatics!

We are a subdivision of the Biomedical Genomics Group at CNAG. Our research focuses on the development of tools for handling genomic and phenotypic data.

Mainly using Perl, Python, JavaScript (React) and R.

Tools

Convert-Pheno Convert-Pheno

A software toolkit for the interconversion of standard data models for phenotypic data

Published open access: Access the article by clicking here.
Playground Uptime Robot status
Documentation Perl Module Documentation Status
Documentation Web-UI Documentation Status
Code Repository Perl Module CPAN Publish
Code Repository Web-UI Docker build server & client

Pheno-Ranker

Advancing Semantic Similarity Analysis of Phenotypic Data Stored in GA4GH Standards and Beyond

Manuscript in preparation.
Playground Uptime Robot status
Documentation Perl Module Documentation Status
Documentation Web-UI Documentation Status
Code Repository Perl Module CPAN Publish
Code Repository Web-UI Docker build server & client

Pinned Loading

  1. convert-pheno convert-pheno Public

    A software toolkit for the interconversion of standard data models for phenotypic data

    Perl 9 1

  2. convert-pheno-ui convert-pheno-ui Public

    The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

    FreeMarker 4 1

  3. pheno-ranker pheno-ranker Public

    Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2.

    Perl 4 1

  4. pheno-ranker-ui pheno-ranker-ui Public

    The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

    R 2

Repositories

Showing 8 of 8 repositories
  • convert-pheno Public

    A software toolkit for the interconversion of standard data models for phenotypic data

    CNAG-Biomedical-Informatics/convert-pheno’s past year of commit activity
    Perl 9 Artistic-2.0 1 1 0 Updated Nov 29, 2024
  • pheno-ranker-app Public

    A standalone desktop application for phenotype ranking using the Pheno-Ranker tool, built with Python and CustomTkinter.

    CNAG-Biomedical-Informatics/pheno-ranker-app’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 29, 2024
  • pheno-ranker Public

    Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2.

    CNAG-Biomedical-Informatics/pheno-ranker’s past year of commit activity
    Perl 4 Artistic-2.0 1 0 0 Updated Nov 28, 2024
  • convert-pheno-ui Public

    The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

    CNAG-Biomedical-Informatics/convert-pheno-ui’s past year of commit activity
    FreeMarker 4 GPL-3.0 1 2 43 Updated Nov 22, 2024
  • omop-cdm-2-beacon-v2 Public
    CNAG-Biomedical-Informatics/omop-cdm-2-beacon-v2’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 9, 2024
  • pheno-ranker-ui Public

    The web ui (R-Shiny application) for Pheno-Ranker, a tool designed for performing semantic similarity analysis on phenotypic data structured in JSON format, such as Beacon v2 Models or Phenopackets v2

    CNAG-Biomedical-Informatics/pheno-ranker-ui’s past year of commit activity
    R 2 GPL-3.0 0 0 31 Updated Nov 7, 2024
  • .github Public

    Repository for modifying the organization's profile page

    CNAG-Biomedical-Informatics/.github’s past year of commit activity
    Makefile 0 0 0 0 Updated Sep 29, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    CNAG-Biomedical-Informatics/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,310 0 0 Updated Sep 17, 2023

Top languages

Loading…

Most used topics

Loading…