other alignment tools?

[Kapeel]

Can Teaser be used to bench-marking RNA aligners?

[smolkmo]

Hi Kapeel,

We are currently extending Teaser in that direction. We expect a public version for RNA-Seq to be usable by end of this year.

Moritz

[c-guzman]

Any update on this @smolkmo?

[fritzsedlazeck]

Hi,
Yes we have a prototype. We are currently running multiple tests to see how it performs. If everything checks out we could put it online in the next 1-2 months.
Cheers
Fritz

[c-guzman]

Was wondering if there have been any updates for bench-marking RNA-seq aligners?

[fritzsedlazeck]

Moritz is quite busy with exams, but we hope to push it soon.
Cheers
Fritz

[manuelsmendoza]

Hi @fritzsedlazeck, any update for RNA-Seq aligners bench-marking?

[fritzsedlazeck]

Unfortunately, not much. Moritz has decided to not continue in comp biology. i just got a new lab member that hopefully takes over soon.
Sorry for the inconvenience.
Fritz