publish-website.yml

name: Publish Shiny App

on:
  push:
    branches: [main, master]
  workflow_dispatch:

permissions:
  contents: read
  pages: write
  id-token: write

jobs:
  build-and-deploy:
    runs-on: ubuntu-latest

    steps:
    # Step 1: Check out the repository
    - name: Check out repository
      uses: actions/checkout@v4

    # Step 2: Install system dependencies
    - name: Install system dependencies (libarchive-dev and libcurl4-openssl-dev)
      run: sudo apt-get update && sudo apt-get install -y libarchive-dev libcurl4-openssl-dev

    # Step 3: Set up R
    - name: Set up R
      uses: r-lib/actions/setup-r@v2

    # Step 4: Install Shinylive
    # - name: Install Shinylive
    #   run: |
    #     Rscript -e 'install.packages("shinylive", repos = "https://cloud.r-project.org")'

    - name: "Setup R dependencies"
      uses: r-lib/actions/setup-r-dependencies@v2
      with:
        packages:
          cran::shinylive@0.2.0
          any::shiny
          any::DT
          any::bslib
          any::broom
          any::ggplot2
          any::base64enc
          any::shinyjs
          any::mgcv
          any::RColorBrewer
          any::tidyr
          any::purrr
          any::agricolae
          any::drc
          any::cowplot
          any::MASS
          any::Matrix
          any::equatiomatic
          any::openxlsx
          any::car
          any::httr
          any::jose
          any::openssl

    # Step 5: Export Shiny app as a static website
    - name: Export Shiny app
      run: |
        Rscript -e 'shinylive::export("./app", "_site")'

    # Step 6: Upload artifact for deployment
    - name: Upload Pages artifact
      uses: actions/upload-pages-artifact@v2
      with:
        path: _site
        retention-days: 1

    # Step 7: Deploy to GitHub Pages
    - name: Deploy to GitHub Pages
      uses: actions/deploy-pages@v2