build_deb_pkg.yml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: Ubuntu/Debian build

on:
  push:
    tags:
      - '*'
env:
  APPLICATION_NAME: piranhaGUI

permissions:
  contents: write

defaults:
  run:
    shell: bash -l {0}

jobs:

  prepare_build:
    runs-on: ubuntu-latest
      
    steps:
    - uses: actions/checkout@v4
#    - name: Set up Python 3.10
#      uses: actions/setup-python@v3
#      with:
#        python-version: "3.10"
    - uses: conda-incubator/setup-miniconda@v3
      with:
          auto-update-conda: false
          environment-file: artifice/environment.yml
          activate-environment: artifice
          channels: conda-forge,defaults
          miniforge-version: latest
          auto-activate-base: false
#    - name: Install dependencies
#      run: |
#        echo ls
#        python -m pip install --upgrade pip
#        # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
#        # $CONDA is an environment variable pointing to the root of the miniconda directory
#        $CONDA/bin/conda env update --file artifice/environment.yml --name base
    #- name: Lint with flake8
    #  run: |
    #    $CONDA/bin/conda install flake8
    #    # stop the build if there are Python syntax errors or undefined names
    #    $CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
    #    # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
    #    $CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistic
    #- name: Test with pytest
    #  run: |
    #    pytest
    - name: create pip requirements file (for building deb package)
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        pip freeze > artifice/requirements.txt

    - name: increment version number
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        python artifice/update_version_number.py ${{ github.ref_name }} piranhaGUI
        
    - name: set git config
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        git config --local user.email "action@github.com"
        git config --local user.name "GitHub Action"
        
    - name: stage changed files
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        git add *
        
    - name: commit changes
      id: commit
      continue-on-error: true
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        git commit -m"incrementing version number"
        
    - name: set git config
      env:
        GITHUB_TOKEN: ${{ github.token }}
      run: |
        git fetch origin main
        
    - name: push changes to main
      env:
        GITHUB_TOKEN: ${{ github.token }}
      if: steps.commit.outcome  == 'success'
      run: |
        git push origin HEAD:main

    - name: pull piranha docker image
      run: |
        docker pull polionanopore/piranha:latest
        
    - name: save piranha docker image to file
      working-directory: ./artifice/
      run: |
        mkdir piranha_image_file
        docker save --output piranha_image_file/piranha.tar polionanopore/piranha:latest
        
    - name: Temporarily save piranha docker image
      uses: actions/upload-artifact@v4
      with:
        name: piranha.tar
        path: artifice/piranha_image_file/piranha.tar
        retention-days: 1


  build_deb_release:
    needs: [prepare_build]
    runs-on: ubuntu-latest
    outputs:
      release_url: ${{ steps.create_release.outputs.upload_url }}
      
    steps:
    - uses: actions/checkout@v4
    
    - name: Set up Python 3.10
      uses: actions/setup-python@v3
      with:
        python-version: "3.10"

    - name: make sure up to date
      run: |
        git pull origin main

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        # if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
        pip install -r artifice/requirements.txt
        
 #   - name: make dir for piranha image file
 #     working-directory: ./artifice
 #     run: |
 #       mkdir piranha_image_file

#    - name: Retrieve saved piranha docker image
#      uses: actions/download-artifact@v4
#      with:
#        name: piranha.tar
#        path: artifice/piranha_image_file/
        
    - name: build deb package
      working-directory: ./artifice/linux_build/
      run: |
        source create_piranha_package
        
    - name: release
      uses: actions/create-release@v1
      id: create_release
      with:
        draft: false
        prerelease: true
        release_name: ${{ env.APPLICATION_NAME }} v${{ github.ref_name }}
        tag_name: ${{ github.ref_name }}
        body_path: ''
      env:
        GITHUB_TOKEN: ${{ github.token }}
        
    - name: upload ubuntu/debian package
      uses: actions/upload-release-asset@v1
      env:
        GITHUB_TOKEN: ${{ github.token }}
      with:
        upload_url: ${{ steps.create_release.outputs.upload_url }}
        asset_path: artifice/linux_build/pkg_file/${{ env.APPLICATION_NAME }}_${{ github.ref_name }}.deb
        asset_name: ${{ env.APPLICATION_NAME }}_${{ github.ref_name }}.deb
        asset_content_type: application/vnd.debian.binary-package
             
  build_darwin_release:
    needs: [build_deb_release]
    runs-on: macos-13
    env:
      RELEASE_URL: ${{ needs.build_deb_release.outputs.release_url }}
  
    steps:
    - uses: actions/checkout@v4
  
    - name: make sure up to date
      run: |
        git pull origin main
    
    - uses: conda-incubator/setup-miniconda@v3
      with:
          auto-update-conda: false
          environment-file: artifice/environment.yml
          activate-environment: artifice
          channels: conda-forge,defaults
          miniforge-version: latest
          auto-activate-base: false

#    - name: Retrieve saved piranha docker image
#      uses: actions/download-artifact@v4
#      with:
#        name: piranha.tar
#        path: artifice/resources/
          
    - name: build package
      working-directory: ./artifice/mac_build/pyinstaller_build/
      run: |
        pyinstaller piranhaGUI.spec
           
    - name: compress macos app
      working-directory: ./artifice/mac_build/pyinstaller_build/dist/
      run: |
        ditto -c -k --sequesterRsrc --keepParent --zlibCompressionLevel 9 ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}.app ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_macos.zip
        
    - name: upload mac package
      uses: actions/upload-release-asset@v1
      env:
        GITHUB_TOKEN: ${{ github.token }}
      with:
        upload_url: ${{ env.RELEASE_URL }}
        asset_path: ./artifice/mac_build/pyinstaller_build/dist/${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_macos.zip
        asset_name: ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_macos.zip
        asset_content_type: application/zip

  build_win_release:
    needs: [build_deb_release]
    runs-on: windows-latest
    env:
      RELEASE_URL: ${{ needs.build_deb_release.outputs.release_url }}

    steps:
    - uses: actions/checkout@v4

    - name: make sure up to date
      run: |
        git pull origin main

    - uses: conda-incubator/setup-miniconda@v3
      with:
          auto-update-conda: false
          environment-file: artifice/environment.yml
          activate-environment: artifice
          channels: conda-forge,defaults
          miniforge-version: latest
          auto-activate-base: false

#    - name: make dir for piranha image file
#      working-directory: ./artifice
#      run: |
#        mkdir piranha_image_file

#    - name: Retrieve saved piranha docker image
#      uses: actions/download-artifact@v4
#      with:
#        name: piranha.tar
#        path: artifice/piranha_image_file/
        
    - name: build package
      working-directory: ./artifice/windows_build/
      run: |
        ./build_windows.bat

    - name: compile installer
      uses: Minionguyjpro/Inno-Setup-Action@v1.2.2
      with:
        path: ./artifice/windows_build/dist/piranhaGUI_installer.iss

    - name: upload windows installer
      uses: actions/upload-release-asset@v1
      env:
        GITHUB_TOKEN: ${{ github.token }}
      with:
        upload_url: ${{ env.RELEASE_URL }}
        asset_path: artifice/windows_build/dist/installer/${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_installer_windows.exe
        asset_name: ${{ env.APPLICATION_NAME }}v${{ github.ref_name }}_installer_windows.exe
        asset_content_type: application/vnd.microsoft.portable-executable