Conda activate fix and development environment #29
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| pull_request: | |
| branches: | |
| - develop | |
| jobs: | |
| test-full: | |
| name: Full Test Suite | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.11] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Linux dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libopenblas-dev gcc-9 g++-9 | |
| - name: Install macOS Dependencies | |
| shell: bash -l {0} | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew tap sfarrens/sf | |
| brew install bigmac libomp | |
| brew reinstall gcc | |
| - name: Set up conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: true | |
| miniforge-version: latest | |
| - name: Install package (Linux) | |
| shell: bash -l {0} | |
| env: | |
| CC: gcc-9 | |
| CXX: g++-9 | |
| if: runner.os == 'Linux' | |
| run: ./install_shapepipe --env-dev | |
| - name: Install package (macOS) | |
| shell: bash -l {0} | |
| if: runner.os == 'macOS' | |
| run: ./install_shapepipe --env-dev | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| conda activate shapepipe-dev | |
| pytest | |
| shapepipe_run -c example/config.ini |