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Random catalogue improved healpix handling #687

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wants to merge 280 commits into from
Closed

Random catalogue improved healpix handling #687

wants to merge 280 commits into from
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Commits on Nov 19, 2023

  1. script to call curl with canfar contained updated, adding NCORE as ar… 

    …gument
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  2. added init scripts for canfar; job_sp added n_smp for further jobs

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  3. script to call curl for canfar container: added resources

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  4. testing input numbers

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Commits on Nov 20, 2023

  1. removed debug msg

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  2. numpy error fixed with version upgrade

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  3. Merge branch 'science_portal_run' of github.com:martinkilbinger/shape… 

    …pipe-1 into science_portal_run
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Commits on Nov 22, 2023

  1. Getting ready for exclusive-one-tile processing

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  2. Added command line option to specify exclusive ID for processing

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    martinkilbinger committed Nov 22, 2023
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  3. Merge remote-tracking branch 'origin/exclusive' into science_portal_run

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Commits on Nov 24, 2023

  1. curl script exclusive ID

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  2. Dockerfile conda -> source activate

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  3. Merge remote-tracking branch 'origin/docker_image' into docker_image 

    Conflicts:
	Dockerfile
	environment.yml
	scripts/sh/init_canfar.sh
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  4. Merge branch 'docker_image' of github.com:martinkilbinger/shapepipe-1… 

    … into docker_image
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  5. comment added

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  6. Updated Dockerfile

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  7. running with exclusive ID

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Commits on Nov 25, 2023

  1. exp runs

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  2. local curl script NCORES -> 1

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Commits on Nov 28, 2023

  1. Renamed science-portal scripts (local/remote)

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Commits on Nov 30, 2023

  1. added BigMac depdendency for macOS

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Commits on Dec 1, 2023

  1. activate dev environment

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  2. trying to run Pi

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  3. Merge remote-tracking branch 'origin/science_portal_run' into exclusive

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  4. numpy -> 1.22 to avoid asscalar bug

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  5. added cs_util to dev env

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Commits on Dec 3, 2023

  1. aux script to create links for exposure output runs for tile

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  2. Merge remote-tracking branch 'origin/science_portal_run' into exclusive

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  3. Added aux script to update runs log file

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  4. update runs log file script: deal with multiple runs of same module

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Commits on Dec 4, 2023

  1. run_log: added function get_all_dirs

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  2. Fixed new function get_all_dirs

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    martinkilbinger committed Dec 4, 2023
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  3. Fixed (as for MCCD) FITS key bug

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  4. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to science_portal_run
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  5. vignet makers: can use last and all in additional input inage directo… 

    …ries
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Commits on Dec 8, 2023

  1. Dockerfile + jupyter, activate

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  2. file handler raises error if no process

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    martinkilbinger committed Dec 8, 2023
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  3. combine mask outputs

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Commits on Dec 13, 2023

  1. canfar curl command: added kind (tile, exp) as option

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  2. curl remote job script init_run_exclusive_canfar: command line option… 

    …s properly
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    martinkilbinger committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. curl local command: added -k kind

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Commits on Dec 15, 2023

  1. summary missing ID 32 fixed (?)

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  2. canfar scripts command line options

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  3. curl canfar local script added job, kind

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  4. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to science_portal_run
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  5. Merge pull request #4 from martinkilbinger/science_portal_run 

    Science portal run
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Commits on Dec 17, 2023

  1. SP ngmxix (job 128) running on canfar

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  2. curl canfar local script updated

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  3. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive

Conflicts:
	scripts/sh/curl_canfar_local.sh
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Commits on Dec 19, 2023

  1. curl scripts updated

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  2. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive
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  3. run summary more OO

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  4. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive
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Commits on Dec 21, 2023

  1. update_runs_log_file script: fixed bug when run dir is empty

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    martinkilbinger committed Dec 21, 2023
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  2. improved canfar job scripts; fixed some make cat bugs

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    martinkilbinger committed Dec 21, 2023
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  3. added curl to Dockerimage

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    martinkilbinger committed Dec 21, 2023
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  4. Merge remote-tracking branch 'origin/exclusive' into exclusive

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  5. Remove temp hack from mask

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  6. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive
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  7. removed unused code from mask

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  8. Merge pull request #3 from martinkilbinger/exclusive 

    Canfar science portal
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    martinkilbinger authored Dec 21, 2023
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  9. Merge remote-tracking branch 'origin/develop' into develop

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Commits on Dec 23, 2023

  1. curl scripts updated

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Commits on Dec 25, 2023

  1. combine psf validation files: preles now with prepare_tiles_for_final… 

    ….bash
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  2. Update post_processing.md 

    post processing doc: linked to (new) vos_retrieve file
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  3. prepare tiles script loop tests

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  4. Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

    @martinkilbinger
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  5. curl canfar local script minor change

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  6. added vos doc md file

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  7. Update post_processing.md

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  8. Update vos_retrieve.md

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  9. Update vos_retrieve.md

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  10. Update vos_retrieve.md

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  11. Update vos_retrieve.md

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  12. Update vos_retrieve.md 

    copied vos sections
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  13. Update vos_retrieve.md

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  14. Update vos_retrieve.md

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  15. combine runs script renamed

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  16. Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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  17. Update post_processing.md 

    cleaned up psf post proc
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Commits on Dec 26, 2023

  1. P3 proceesing to final cat

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  2. Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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  3. Merge branch 'develop' into p3

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  4. Merge pull request #5 from martinkilbinger/p3 

    P3
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Commits on Jan 6, 2024

  1. config files updated

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Commits on Jan 15, 2024

  1. PSFEx interp runner: allowing all: for ME_DOT_PSF_PDIRS

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  2. init run exc script: added -d option; updates

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  3. job sp canfar script: remove old vos upload code

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  4. summary create library and param files

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  5. minor changes

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  6. curl local script: now working with -e ID and -f file_IDs, in dry and… 

    … real run
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Commits on Jan 16, 2024

  1. summary: fixed main path, verbose

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  2. Started canfar howto

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  3. Added summary run notebook

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Commits on Jan 17, 2024

  1. psfex_interp: continue instead of error if one of the .psf files not … 

    …found
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  2. fixed symlink config files

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  3. Updated summary run

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  4. revert to main psfex in link exp for tiles script

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  5. curl job script: remoging session logs

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  6. comments

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  7. Merge pull request #6 from martinkilbinger/P7 

    Towards pre-v2 re-run of patches on canfar
    @martinkilbinger
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Commits on Jan 19, 2024

  1. Update canfar.md 

    Started md and cleanup of canfar doc
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  2. Update canfar.md 

    continue editing
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  3. Update canfar.md 

    added monitoring and status
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  4. Update canfar.md 

    monitoring
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  5. Merge pull request #8 from martinkilbinger/martinkilbinger-patch-1 

    Update canfar.md
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  6. Merge pull request #7 from martinkilbinger/martinkilbinger-canfar-doc 

    Update canfar.md
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Commits on Jan 26, 2024

  1. updated canfar doc

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  2. script with akaha lib to count headlerss jobs

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  3. cleaned up curl submit script

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  4. minor modifs to summary

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  5. Removed VM_HOME; jon sp canfar cleaned up

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Commits on Jan 30, 2024

  1. Dockerfile cleand up

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Commits on Feb 1, 2024

  1. summary params minor bug fixed

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  2. major bugx fixed: N_SMP was n_SMP, not propagated

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  3. major bugx fixed: N_SMP was n_SMP, not propagated

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  4. summary nb

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Commits on Feb 11, 2024

  1. sumamry updated

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  2. terminal title from within curl script

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  3. Update tiles_P7.txt 

    remove 000.000
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  4. Merge pull request #9 from martinkilbinger/P7 

    Canfar job limit
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  5. merged Dockerfile from docker_image

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Commits on Feb 23, 2024

  1. added COSMOS tile list

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  2. Merge remote-tracking branch 'origin/develop' into develop

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  3. monitoring and job handling scripts; small modifs, output; canfar pip… 

    …eline job description to docs/source
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  4. Merge pull request #10 from martinkilbinger/curl 

    monitoring
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  5. Added (back) from v1 exp mccd ini file

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Commits on Mar 5, 2024

  1. combine run script: flag_tile and flag_exp as diff options

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Commits on Mar 6, 2024

  1. mask runer excluding processed files working

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  2. combine runs for masks: changed output target dir name

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  3. Added COSMOS tile list

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  4. summary bug fixed

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  5. comment removed

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  6. style

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  7. Merge pull request #11 from martinkilbinger/mask 

    Mask runner skip processing if output file exists
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  8. Added DR5 tile list file

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  9. t branMerge remote-tracking branch 'origin/develop' into develop

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  10. Merge remote-tracking branch 'upstream/develop' into develop

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  11. Merge remote-tracking branch 'origin/develop' into docker_image

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  12. Delete scripts/sh/init_canfar.sh

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  13. Merge pull request #13 from martinkilbinger/docker_image 

    Docker image
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  14. Merge remote-tracking branch 'origin/develop' into develop

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  15. Merge remote-tracking branch 'origin/develop' into plot_spectro

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  16. Merge pull request #14 from martinkilbinger/plot_spectro 

    spectroscopic data for plotting
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  17. Merge remote-tracking branch 'origin/develop' into develop

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  18. remove centos ci

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  19. Merge branch 'develop' of github.com:martinkilbinger/shapepipe-1 into… 

    … develop
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  20. repaired plot spectro notebook

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  21. added doc string

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  22. Merge branch 'develop' of github.com:martinkilbinger/shapepipe-1 into… 

    … develop
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  23. python example runner: added back mccd and pysap

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  24. corrected typo in doc string

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Commits on Mar 13, 2024

  1. updated canfar pipeline doc

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  2. fixed combined mask input dir

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  3. added parameters to final cat

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  4. summary

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  5. Removed rarely used ngmix njob/ngal options; splits computed automati… 

    …cally
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  6. canfar init + run job: removed prev Ms and Mc dirs for job 256

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  7. merge sep cats: error if ngmix #HDUs < 6

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  8. Merge pull request #15 from martinkilbinger/cleanup_canfar 

    Cleanup canfar
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Commits on Apr 3, 2024

  1. env-dev updated to min versions on canfar (docker image SP 1.1)

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Commits on Apr 4, 2024

  1. Merge remote-tracking branch 'upstream' into 651-conda-activate-fix-MK

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  2. Merge remote-tracking branch 'origin/develop' into 651-conda-activate… 

    …-fix-MK
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Commits on Apr 10, 2024

  1. minor changes

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Commits on May 14, 2024

  1. Improved error msg for empty process list and -e flag

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Commits on May 20, 2024

  1. canfar job descr and summary updated

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  2. fixed err msg

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  3. config files updated

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  4. summary updated

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  5. spread model: added check on non-positive object size

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  6. no change

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  7. added checks

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  8. scripts updated

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Commits on May 21, 2024

  1. split exp runner: added checks and err msg for data integrity

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  2. added Mh cfg file

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  3. summary v1.2: split_exp using exposures, no longer shdu

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Commits on May 28, 2024

  1. Added script to convert pix to world coordinates of PSF measurements

    martinkilbinger committed May 28, 2024
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  2. Merge branch 'v1.4' of github.com:martinkilbinger/shapepipe-1 into v1.4

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Commits on May 30, 2024

  1. merge sep module: fixed cat handling if not sufficient HDUs on input

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  2. summary: split Ms and Mh; writing/reading list_exp to file for sped-up

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  3. improved log and error msg

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  4. tile processing: using all split exp inputs, not only last

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  5. convert psf script err msg

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  6. local Mh handling; 256 512 split

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Commits on Jun 3, 2024

  1. psf converting from val input to merge stars working (not yet plotting)

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  2. summary script fixed bitwise & type

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  3. init canfar script: added DISPLAY to avoid setools qt bug

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  4. trying job name

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  5. merge starcat mod: added input HDU number

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Commits on Jun 11, 2024

  1. get IDs of running jobs

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  2. merge star cats w/o plotting; psf conv stars

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  3. curl&init scrips: remove -k kind options, determined automatically ac… 

    …cording to -j job
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  4. minor bug fixes, messages

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  5. combine run for psf_conv updated input dir

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  6. merge star cat: set SExcat to False, so output in HDU 1

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  7. added gfortran to Docker; pytest to env

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Commits on Jun 14, 2024

  1. rho stats using shear_psf_leakage

    martinkilbinger committed Jun 14, 2024
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  2. canfar doc updated

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    martinkilbinger committed Jun 14, 2024
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  3. cleaned up rho stats code

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  4. rho stats testing

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  5. added -p psf to curl and init scripts (to test\!); -m MH

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  6. Merge branch 'v1.4' of github.com:martinkilbinger/shapepipe-1 into v1.4

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  7. cgf file INPUT updated

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Commits on Jun 15, 2024

  1. rho stats plots added UNIONS option (shear_psf_leakage)

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Commits on Jun 16, 2024

  1. plot rho stats for converted star cat

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Commits on Jun 19, 2024

  1. ran black; pipeline canfar minor update

    martinkilbinger committed Jun 19, 2024
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Commits on Jun 25, 2024

  1. small modifs to make thing smoother

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    martinkilbinger committed Jun 25, 2024
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Commits on Jun 26, 2024

  1. canfar scripts: -m 1 creates local exp headers indep of job

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    martinkilbinger committed Jun 26, 2024
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  2. summary check special working

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    martinkilbinger committed Jun 26, 2024
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  3. ngmix: added last check that all 8 HDUs are present

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    martinkilbinger committed Jun 26, 2024
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  4. debug messages removed

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    martinkilbinger committed Jun 26, 2024
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  5. Merge branch 'v1.4' of github.com:martinkilbinger/shapepipe-1 into v1.4

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    martinkilbinger committed Jun 26, 2024
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Commits on Jul 1, 2024

  1. Added GaAP photometry to SEx param file

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    martinkilbinger committed Jul 1, 2024
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  2. summary specials

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    martinkilbinger committed Jul 1, 2024
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  3. print msg if empty vignets

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    martinkilbinger committed Jul 1, 2024
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  4. doc

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    martinkilbinger committed Jul 1, 2024
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  5. cleaning up and adding doc strings to vignet maker

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    martinkilbinger committed Jul 1, 2024
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  6. added clarifying comments to vignet maker

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    martinkilbinger committed Jul 1, 2024
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Commits on Jul 12, 2024

  1. cleaned up curl script

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    martinkilbinger committed Jul 12, 2024
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  2. canfar scripts adopted to new env; added debug

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    martinkilbinger committed Jul 12, 2024
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  3. shapepipe_run script adopted to new canfar env

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    martinkilbinger committed Jul 12, 2024
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  4. setools matplotlib Agg to avoid display error

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    martinkilbinger committed Jul 12, 2024
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Commits on Aug 29, 2024

  1. ngmix: catching missing keys in postage stamp sqlite database files

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    martinkilbinger committed Aug 29, 2024
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  2. combin runs script: added tile_detection

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    martinkilbinger committed Aug 29, 2024
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  3. Merge branch 'v1.4' of github.com:martinkilbinger/shapepipe-1 into v1.4

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    martinkilbinger committed Aug 29, 2024
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Commits on Oct 8, 2024

  1. cleaned up convery pix script

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    martinkilbinger committed Oct 8, 2024
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  2. summary added special, n_sh as variable

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    martinkilbinger committed Oct 8, 2024
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  3. debugging curl canfar

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    martinkilbinger committed Oct 8, 2024
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  4. clarified doc on merging star cat

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    martinkilbinger committed Oct 8, 2024
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  5. Added checks and improved messages for keys in FITS files

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    martinkilbinger committed Oct 8, 2024
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  6. debugging curl canfar

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    martinkilbinger committed Oct 8, 2024
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  7. Pi psfex HDU number changed

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    martinkilbinger committed Oct 8, 2024
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  8. cosmetic changes

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    martinkilbinger committed Oct 8, 2024
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Commits on Oct 21, 2024

  1. doc canfar: options sp_local=0,1

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    martinkilbinger committed Oct 21, 2024
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  2. split image config more flexible

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    martinkilbinger committed Oct 21, 2024
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  3. init_curl script: allowing for individual -j 2, 8 (sp_local=1)

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    martinkilbinger committed Oct 21, 2024
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  4. Merge remote-tracking branch 'upstream/develop' into 651-conda-activa… 

    …te-fix-MK
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    martinkilbinger committed Oct 21, 2024
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  5. Merge branch '651-conda-activate-fix-MK' into v1.4

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    martinkilbinger committed Oct 21, 2024
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  6. added vos

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    martinkilbinger committed Oct 21, 2024
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  7. Merge remote-tracking branch 'origin/v1.4' into tiles_202402

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    martinkilbinger committed Oct 21, 2024
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  8. Merge remote-tracking branch 'origin/tiles_202402' into v1.4

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    martinkilbinger committed Oct 21, 2024
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  9. Merge remote-tracking branch 'origin/v1.4' into cosmos

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    martinkilbinger committed Oct 21, 2024
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  10. added python-pysap to env

    martinkilbinger committed Oct 21, 2024
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  11. Merge branch 'v1.4' of github.com:martinkilbinger/shapepipe-1 into v1.4

    martinkilbinger committed Oct 21, 2024
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  12. Merge remote-tracking branch 'origin/v1.4' into wcs_mk

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    martinkilbinger committed Oct 21, 2024
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  13. Merge pull request #20 from martinkilbinger/wcs_mk 

    Wcs mk
    @martinkilbinger
    martinkilbinger authored Oct 21, 2024
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Commits on Oct 22, 2024

  1. added pandas to yml

    martinkilbinger committed Oct 22, 2024
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  2. Merge remote-tracking branch 'origin/v1.4' into v1.4

    martinkilbinger committed Oct 22, 2024
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Commits on Oct 23, 2024

  1. Merge remote-tracking branch 'origin/develop' into random

    martin kilbinger committed Oct 23, 2024
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  2. Merge remote-tracking branch 'origin/v1.4' into random

    martin kilbinger committed Oct 23, 2024
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