DESCRIPTION

Type: Package
Package: CimpleG
Title: CimpleG - Individual/Single CpG sites For Classification and
    Deconvolution
Version: 0.0.5.9028
Date: 2023-12-13
Authors@R:
    person("Tiago", "F.V. Maié", , "tiagomaie@hotmail.com", role = c("aut", "cre"))
Maintainer: Tiago Maié <tiagomaie@hotmail.com>
Description: CimpleG is a simple package to find single-CpG based
    signatures for use in classification and deconvolution.
License: GPL (>= 3)
URL: https://github.com/CostaLab/CimpleG,
    https://costalab.github.io/CimpleG/
BugReports: https://github.com/CostaLab/CimpleG/issues
Depends:
    R (>= 4.0)
Imports:
    archive,
    assertthat,
    broom,
    butcher,
    caret,
    data.table,
    devtools,
    dplyr,
    forcats,
    ggExtra,
    ggplot2,
    ggrepel,
    ggsci,
    grDevices,
    gtools,
    magrittr,
    matrixStats,
    methods,
    nnls,
    OneR,
    parsnip,
    patchwork,
    purrr,
    recipes,
    rlang,
    rsample,
    scales,
    stats,
    tibble,
    tictoc,
    tidyr,
    tidyselect,
    tsutils,
    tune,
    utils,
    vroom,
    workflows,
    yardstick
Suggests: 
    Biobase (>= 2.62.0),
    biomaRt,
    C50,
    circlize,
    EpiDISH (>= 2.16.0),
    furrr,
    future,
    future.apply,
    GEOquery,
    ggbeeswarm,
    ggsignif,
    glmnet,
    knitr,
    minfi (>= 1.46.0),
    mltools,
    NMF,
    nnet,
    plyr,
    ranger,
    RColorBrewer,
    reshape2,
    Rfast,
    rmarkdown,
    spelling,
    stringr,
    SummarizedExperiment (>= 1.30.2),
    testthat (>= 3.0.0),
    withr,
    xgboost
VignetteBuilder: 
    knitr
Remotes: 
    Biobase,
    EpiDISH,
    minfi,
    SummarizedExperiment
Config/testthat/edition: 3
Config/testthat/parallel: true
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 7.2.3