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I have an issue during rgt-hint differential and it says:
Traceback (most recent call last):
File "/home/kthbecu/.local/bin/rgt-hint", line 8, in
sys.exit(main())
File "/home/kthbecu/.local/lib/python3.10/site-packages/rgt/HINT/Main.py", line 95, in main
args.func(args)
File "/home/kthbecu/.local/lib/python3.10/site-packages/rgt/HINT/DifferentialAnalysis.py", line 119, in diff_analysis_run
mpbs.read(mpbs_file)
File "/home/kthbecu/.local/lib/python3.10/site-packages/rgt/GenomicRegionSet.py", line 254, in read
io.read_to_grs(self, filename)
File "/home/kthbecu/.local/lib/python3.10/site-packages/rgt/GenomicRegionSet.py", line 52, in read_to_grs
with open(filename) as f:
FileNotFoundError: [Errno 2] No such file or directory: ''
This issue is specific to my own data which is ATAC-seq on human (hg38), mapped by bowtie2 and peak-called by MACS3.
rgt-hint differential on the tutorial data (DendriticCells) succeeded with no any error.
How can I solve this issue?
Thank you in advance.
The text was updated successfully, but these errors were encountered:
Hello.
I have an issue during rgt-hint differential and it says:
This issue is specific to my own data which is ATAC-seq on human (hg38), mapped by bowtie2 and peak-called by MACS3.
rgt-hint differential on the tutorial data (DendriticCells) succeeded with no any error.
How can I solve this issue?
Thank you in advance.
The text was updated successfully, but these errors were encountered: