bsc_inflateRelabelIslands fails with "Unable to perform assignment because the left and right sides have a different number of elements."

[soichih]

I've noticed a job failing with this error message (on app-wmaSeg)

+ echo 'running segmentation'
+ singularity exec -e docker://brainlife/mcr:r2019a ./compiled/main
Unable to perform assignment because the left and right sides have a different number of elements.

Error in bsc_inflateRelabelIslands (line 67)

Error in main (line 15)

MATLAB:matrix:singleSubscriptNumelMismatch

The input atlas looks fine.. so I am not sure why it's failing. Here is the input atlas that's failing

/N/project/plab/scratch/hayashis/aparc.a2009s+aseg.nii.gz

We need to troubleshoot this.

[DanNBullock]

Have you seen with other outputs or just this one?

…

On Tue, May 19, 2020, 10:53 AM Soichi Hayashi ***@***.***> wrote: This message was sent from a non-IU address. Please exercise caution when clicking links or opening attachments from external sources. I've noticed a job failing with this error message (on app-wmaSeg) + echo 'running segmentation' + singularity exec -e docker://brainlife/mcr:r2019a ./compiled/main Unable to perform assignment because the left and right sides have a different number of elements. Error in bsc_inflateRelabelIslands (line 67) Error in main (line 15) MATLAB:matrix:singleSubscriptNumelMismatch The input atlas looks fine.. so I am not sure why it's failing. Here is the input atlas that's failing /N/project/plab/scratch/hayashis/aparc.a2009s+aseg.nii.gz We need to troubleshoot this. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#18>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADFXNPJFTWHYVLQBJDVFBG3RSKMN3ANCNFSM4NFCOBQA> .

[soichih]

So far this is the first one that I've noticed, but there are probably other occurrences of this issue. On Tue, May 19, 2020 at 11:03 AM Daniel Bullock <[email protected]> wrote:

…

Have you seen with other outputs or just this one? On Tue, May 19, 2020, 10:53 AM Soichi Hayashi ***@***.***> wrote: > This message was sent from a non-IU address. Please exercise caution when > clicking links or opening attachments from external sources. > > I've noticed a job failing with this error message (on app-wmaSeg) > > + echo 'running segmentation' > + singularity exec -e docker://brainlife/mcr:r2019a ./compiled/main > Unable to perform assignment because the left and right sides have a different number of elements. > > Error in bsc_inflateRelabelIslands (line 67) > > Error in main (line 15) > > MATLAB:matrix:singleSubscriptNumelMismatch > > The input atlas looks fine.. so I am not sure why it's failing. Here is > the input atlas that's failing > > /N/project/plab/scratch/hayashis/aparc.a2009s+aseg.nii.gz > > We need to troubleshoot this. > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#18>, or unsubscribe > < https://github.com/notifications/unsubscribe-auth/ADFXNPJFTWHYVLQBJDVFBG3RSKMN3ANCNFSM4NFCOBQA > > . > — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#18 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAHBR6H7UO74DZOQ7VK2CG3RSKNT5ANCNFSM4NFCOBQA> .

[DanNBullock]

Should be fixed:
372b07a