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pyproject.toml
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pyproject.toml
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[build-system]
requires = ['setuptools >= 61.0.0']
build-backend = 'setuptools.build_meta'
[project]
name = 'brainprint'
version = '0.5.0-dev'
description = 'A package to compute BrainPrint (shape descriptors) from FastSurfer/FreeSurfer MRI segmentations'
readme = 'README.md'
license = {file = 'LICENSE'}
requires-python = '>=3.9'
authors = [
{name = 'Martin Reuter', email = '[email protected]'},
{name = 'Kersten Diers', email = '[email protected]'},
]
maintainers = [
{name = 'Martin Reuter', email = '[email protected]'},
]
keywords = [
'neuroscience',
'sMRI',
'FreeSurfer'
]
classifiers = [
'Operating System :: Microsoft :: Windows',
'Operating System :: Unix',
'Operating System :: MacOS',
'Programming Language :: Python :: 3 :: Only',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Programming Language :: Python :: 3.12',
'Natural Language :: English',
'License :: OSI Approved :: MIT License',
'Intended Audience :: Science/Research',
]
dependencies = [
'numpy>=1.21',
'scipy!=1.13.0',
'pandas',
'lapy >= 1.1.1',
'psutil',
'nibabel',
'scikit-image',
]
[project.optional-dependencies]
build = [
'build',
'twine',
]
doc = [
'furo!=2023.8.17',
'matplotlib',
'memory-profiler',
'numpydoc',
'sphinx!=7.2.*',
'sphinxcontrib-bibtex',
'sphinx-copybutton',
'sphinx-design',
'sphinx-gallery',
'sphinx-issues',
'pypandoc',
'nbsphinx',
'IPython', # For syntax highlighting in notebooks
'ipykernel',
]
style = [
'bibclean',
'codespell',
'pydocstyle[toml]',
'ruff',
]
test = [
'pytest',
'pytest-cov',
'pytest-timeout',
]
all = [
'brainprint[build]',
'brainprint[doc]',
'brainprint[style]',
'brainprint[test]',
]
full = [
'brainprint[all]',
]
[project.urls]
homepage = 'https://github.com/Deep-MI/BrainPrint'
documentation = 'https://github.com/Deep-MI/BrainPrint'
source = 'https://github.com/Deep-MI/BrainPrint'
tracker = 'https://github.com/Deep-MI/BrainPrint/issues'
[project.scripts]
brainprint = 'brainprint.cli:main'
brainprint-sys_info = 'brainprint.commands.sys_info:run'
[tool.setuptools]
include-package-data = false
[tool.setuptools.packages.find]
include = ['brainprint*']
exclude = ['brainprint*tests']
[tool.pydocstyle]
convention = 'numpy'
ignore-decorators = '(copy_doc|property|.*setter|.*getter|pyqtSlot|Slot)'
match = '^(?!setup|__init__|test_).*\.py'
match-dir = '^brainprint.*'
add_ignore = 'D100,D104,D107'
[tool.ruff]
line-length = 88
extend-exclude = [
"doc",
"setup.py",
]
[tool.ruff.lint]
# https://docs.astral.sh/ruff/linter/#rule-selection
select = [
"E", # pycodestyle
"F", # Pyflakes
"UP", # pyupgrade
"B", # flake8-bugbear
"I", # isort
# "SIM", # flake8-simplify
]
[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["F401"]
[tool.pytest.ini_options]
minversion = '6.0'
addopts = '--durations 20 --junit-xml=junit-results.xml --verbose'
filterwarnings = []
[tool.coverage.run]
branch = true
cover_pylib = false
omit = [
'**/__init__.py',
'**/brainprint/_version.py',
'**/brainprint/commands/*',
'**/tests/**',
]
[tool.coverage.report]
exclude_lines = [
'pragma: no cover',
'if __name__ == .__main__.:',
]
precision = 2