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About the outputs #34

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thuxugang opened this issue May 20, 2022 · 2 comments
Open

About the outputs #34

thuxugang opened this issue May 20, 2022 · 2 comments

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@thuxugang
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Hi, thanks for the great work! I am wondering which results are the final iScore. Is it the last column in ScorePredict.dat? Many thanks :)

@thuxugang
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by the way, when i use the output from ZDock, i get this:
#Name nGraphRank nEVDW nEC nEDESOLV iScore
T1099ov2_complex_6 nan 0.000 0.000 0.000 nan
any help?

@thuxugang
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Followings are the error's info.:

Keyword energies not found in ./pdb/pdb7ppp.pdb
            Make sure that ./pdb/pdb7ppp.pdb was generated with HADDOCK
 Warning : Issue encountered during the calculation of the energy terms
           All energy terms set to 0 (i.e. GraphRank score only)
/work/home/xugang/miniconda3/lib/python3.7/site-packages/iScore/function/score.py:86: RuntimeWarning: invalid value encountered in true_divide
  return (data-np.median(data))/iqr(data)

I am wondering that can iScore be used on the traditional pdb file or it must be used on the file generated by HADDOCK?

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