diff --git a/CHANGELOG.md b/CHANGELOG.md index e05b774..80e6190 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,8 @@ ### Fixed - Compilation error with GCC 10, omission of cstdint header +- Removed --skip-maps from standard install due to addition of plasmids, + which require acc/taxid maps ## [2.1.0] - 2020-10-13 diff --git a/scripts/standard_installation.sh b/scripts/standard_installation.sh index ab60ca5..8a7a828 100755 --- a/scripts/standard_installation.sh +++ b/scripts/standard_installation.sh @@ -26,7 +26,7 @@ if [ -n "$KRAKEN2_USE_FTP" ]; then ftp_flag="--use-ftp" fi -kraken2-build --db $KRAKEN2_DB_NAME --download-taxonomy --skip-maps $masking_flag $protein_flag $ftp_flag +kraken2-build --db $KRAKEN2_DB_NAME --download-taxonomy $masking_flag $protein_flag $ftp_flag kraken2-build --db $KRAKEN2_DB_NAME --download-library archaea $masking_flag $protein_flag $ftp_flag kraken2-build --db $KRAKEN2_DB_NAME --download-library bacteria $masking_flag $protein_flag $ftp_flag kraken2-build --db $KRAKEN2_DB_NAME --download-library viral $masking_flag $protein_flag $ftp_flag