packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2022},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 0.30},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-cowplot,
  title = {cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2},
  author = {Claus O. Wilke},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://wilkelab.org/cowplot/},
}

@Manual{R-diagram,
  title = {diagram: Functions for Visualising Simple Graphs (Networks), Plotting
Flow Diagrams},
  author = {Karline Soetaert},
  year = {2020},
  note = {R package version 1.6.5},
  url = {https://CRAN.R-project.org/package=diagram},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller},
  year = {2022},
  note = {R package version 1.0.10},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-DT,
  title = {DT: A Wrapper of the JavaScript Library DataTables},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2022},
  note = {R package version 0.26},
  url = {https://github.com/rstudio/DT},
}

@Manual{R-dygraphs,
  title = {dygraphs: Interface to Dygraphs Interactive Time Series Charting Library},
  author = {Dan Vanderkam and JJ Allaire and Jonathan Owen and Daniel Gromer and Benoit Thieurmel},
  year = {2018},
  note = {R package version 1.1.1.6},
  url = {https://github.com/rstudio/dygraphs},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2022},
  note = {R package version 3.4.0},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-gifski,
  title = {gifski: Highest Quality GIF Encoder},
  author = {Jeroen Ooms},
  year = {2022},
  note = {R package version 1.6.6-1},
  url = {https://CRAN.R-project.org/package=gifski},
}

@Manual{R-GLMsData,
  title = {GLMsData: Generalized Linear Model Data Sets},
  author = {Peter K. Dunn and Gordon K. Smyth},
  year = {2022},
  note = {R package version 1.4},
  url = {https://CRAN.R-project.org/package=GLMsData},
}

@Manual{R-kableExtra,
  title = {kableExtra: Construct Complex Table with kable and Pipe Syntax},
  author = {Hao Zhu},
  year = {2021},
  note = {R package version 1.3.4},
  url = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.41},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2021},
  note = {R package version 0.20-45},
  url = {http://lattice.r-forge.r-project.org/},
}

@Manual{R-latticeExtra,
  title = {latticeExtra: Extra Graphical Utilities Based on Lattice},
  author = {Deepayan Sarkar and Felix Andrews},
  year = {2022},
  note = {R package version 0.6-30},
  url = {http://latticeextra.r-forge.r-project.org/},
}

@Manual{R-leaflet,
  title = {leaflet: Create Interactive Web Maps with the JavaScript Leaflet
Library},
  author = {Joe Cheng and Bhaskar Karambelkar and Yihui Xie},
  year = {2022},
  note = {R package version 2.1.1},
  url = {https://rstudio.github.io/leaflet/},
}

@Manual{R-MASS,
  title = {MASS: Support Functions and Datasets for Venables and Ripley's MASS},
  author = {Brian Ripley},
  year = {2022},
  note = {R package version 7.3-58.1},
  url = {http://www.stats.ox.ac.uk/pub/MASS4/},
}

@Manual{R-NHANES,
  title = {NHANES: Data from the US National Health and Nutrition Examination Study},
  author = {Randall Pruim},
  year = {2015},
  note = {R package version 2.1.0},
  url = {https://CRAN.R-project.org/package=NHANES},
}

@Manual{R-oz,
  title = {oz: Plot the Australian Coastline and States},
  author = {Bill Venables and Kurt Hornik},
  year = {2016},
  note = {R package version 1.0-21},
  url = {https://CRAN.R-project.org/package=oz},
}

@Manual{R-plot3D,
  title = {plot3D: Plotting Multi-Dimensional Data},
  author = {Karline Soetaert},
  year = {2021},
  note = {R package version 1.4},
  url = {https://CRAN.R-project.org/package=plot3D},
}

@Manual{R-plotfunctions,
  title = {plotfunctions: Various Functions to Facilitate Visualization of Data and
Analysis},
  author = {Jacolien {van Rij}},
  year = {2020},
  note = {R package version 1.4},
  url = {https://jacolienvanrij.com/tutorials.html},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via plotly.js},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2022},
  note = {R package version 4.10.1},
  url = {https://CRAN.R-project.org/package=plotly},
}

@Manual{R-plotrix,
  title = {plotrix: Various Plotting Functions},
  author = {Jim Lemon and Ben Bolker and Sander Oom and Eduardo Klein and Barry Rowlingson and Hadley Wickham and Anupam Tyagi and Olivier Eterradossi and Gabor Grothendieck and Michael Toews and John Kane and Rolf Turner and Carl Witthoft and Julian Stander and Thomas Petzoldt and Remko Duursma and Elisa Biancotto and Ofir Levy and Christophe Dutang and Peter Solymos and Robby Engelmann and Michael Hecker and Felix Steinbeck and Hans Borchers and Henrik Singmann and Ted Toal and Derek Ogle and Darshan Baral and Ulrike Groemping and Bill Venables},
  year = {2021},
  note = {R package version 3.8-2},
  url = {https://CRAN.R-project.org/package=plotrix},
}

@Manual{R-png,
  title = {png: Read and write PNG images},
  author = {Simon Urbanek},
  year = {2022},
  note = {R package version 0.1-8},
  url = {http://www.rforge.net/png/},
}

@Manual{R-qrcode,
  title = {qrcode: Generate QRcodes with R},
  author = {Thierry Onkelinx and Victor Teh},
  year = {2022},
  note = {R package version 0.2.0},
  url = {https://CRAN.R-project.org/package=qrcode},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.18},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-scales,
  title = {scales: Scale Functions for Visualization},
  author = {Hadley Wickham and Dana Seidel},
  year = {2022},
  note = {R package version 1.2.1},
  url = {https://CRAN.R-project.org/package=scales},
}

@Manual{R-shape,
  title = {shape: Functions for Plotting Graphical Shapes, Colors},
  author = {Karline Soetaert},
  year = {2021},
  note = {R package version 1.4.6},
  url = {https://CRAN.R-project.org/package=shape},
}

@Manual{R-slickR,
  title = {slickR: Create Interactive Carousels with the JavaScript 'Slick'
Library},
  author = {Jonathan Sidi},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://github.com/yonicd/slickR},
}

@Manual{R-viridis,
  title = {viridis: Colorblind-Friendly Color Maps for R},
  author = {Simon Garnier},
  year = {2021},
  note = {R package version 0.6.2},
  url = {https://CRAN.R-project.org/package=viridis},
}

@Manual{R-viridisLite,
  title = {viridisLite: Colorblind-Friendly Color Maps (Lite Version)},
  author = {Simon Garnier},
  year = {2022},
  note = {R package version 0.4.1},
  url = {https://CRAN.R-project.org/package=viridisLite},
}

@Manual{R-webexercises,
  title = {webexercises: Create Interactive Web Exercises in R Markdown (Formerly
webex)},
  author = {Dale Barr and Lisa DeBruine},
  year = {2021},
  note = {R package version 1.0.0},
  url = {https://github.com/psyteachr/webexercises},
}

@Manual{R-webshot,
  title = {webshot: Take Screenshots of Web Pages},
  author = {Winston Chang},
  year = {2022},
  note = {R package version 0.5.4},
  url = {https://CRAN.R-project.org/package=webshot},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  publisher = {Springer},
  address = {New York},
  year = {2008},
  note = {ISBN 978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Book{MASS2002,
  title = {Modern Applied Statistics with S},
  author = {W. N. Venables and B. D. Ripley},
  publisher = {Springer},
  edition = {Fourth},
  address = {New York},
  year = {2002},
  note = {ISBN 0-387-95457-0},
  url = {https://www.stats.ox.ac.uk/pub/MASS4/},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Article{plotrix2006,
  year = {2006},
  title = {Plotrix: a package in the red light district of R},
  journal = {R-News},
  volume = {6},
  number = {4},
  pages = {8-12},
  author = {Lemon J},
}

@Manual{qrcode2022,
  title = {qrcode: Generate QRcodes with R. Version 0.2.0},
  author = {Thierry Onkelinx and Victor Teh},
  year = {2022},
  url = {https://thierryo.github.io/qrcode/},
  abstract = {Create QRcode in R.},
  keywords = {two-dimensional barcode; matrix barcode},
  doi = {10.5281/zenodo.5040088},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}