Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in Improved_Seurat_Pre_Process #51

Open
mvhunter1 opened this issue Jun 18, 2021 · 0 comments
Open

Error in Improved_Seurat_Pre_Process #51

mvhunter1 opened this issue Jun 18, 2021 · 0 comments

Comments

@mvhunter1
Copy link

Hi,

I'm trying to run Improved_Seurat_Pre_Process on a Seurat object that i've used with Seurat v4. I'm getting the following error after the marker-finding step:

NAs introduced by coercionError in if (min(as.numeric(as.character(genes$cluster))) == 0) { : 
  missing value where TRUE/FALSE needed

From reading answers to other issues it seems like the error may be stemming from using idents other than the original Seurat cluster numbers in my Seurat object. Am I still not able to use idents other than the default seurat_clusters? Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant