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moire 3.5.0

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@m-murphy m-murphy released this 30 Oct 23:02
v3.5.0
7bedf6a
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m-murphy Maxwell Murphy
GPG key ID: 7615D89A64917296
Learn about vigilant mode.

New Features

  • Implemented maximum runtime functionality (#34)
    • The user can now specify a maximum runtime for the MCMC. After the maximum runtime is reached, the MCMC will stop and the current state of the MCMC will be returned.
    • Enabled by setting max_runtime = {time in minutes} in run_mcmc()

Bug Fixes

  • Fixed handling of NA values in allele frequency vector

    • NA values are now replaced with 0
    • Warning message added to alert users of potential MCMC chain issues or loci lacking diversity (#20)

  • Fixed memory crash in prob_any_missing() function (#38)

Other Changes

  • Modified data loading to ungroup input data when loading long form (#37)

  • Updated citation and manuscript information

  • Added OpenMP detection utility

  • Implement logging of individual sample log likelihoods

    • May be useful for diagnosing issues with particular samples, such as those that come from different populations
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