_config.yml

# --- Required options --- #

# Name of website
title: Tumor Profiler Study

# Your name to show in the footer
author: Tumor Profiler Consortium

# --- List of links in the navigation bar --- #

navbar-links:
  About the project: "project"
  Consortium: "consortium"
  Data Access: "data"
  Publications: "publications"
  Press: "press"
  Internal: 
    - Metadata Access: "https://tp-labkey.ethz.ch/labkey/" # Labkey server
    - Reporting: "https://tpreports.nexus.ethz.ch/" # Clinical reports
    - cBioPortal: "https://tp-cbioportal.inf.ethz.ch/cbioportal/" # TuPro cBioPortal
    - Documents: "https://tpreports.nexus.ethz.ch:9443/" # Important administrative documents
    - Wiki: "https://gitlab.inf.ethz.ch/PRJ-TumorProfiler/wiki/-/wikis" # Wiki for consortium members

# --- Logo --- #

# Image to show in the navigation bar - works best with a square image
# Remove this parameter if you don't want an image in the navbar
# avatar: "/assets/img/tupro-logo.png"

# By default, the image is cut into a circle. You can disable this behaviour by setting 'round-avatar: false'
# round-avatar: false

# If you want to have an image logo in the top-left corner instead of having the title of the website,
# then specify the following parameter
title-img: "/assets/img/tupro-logo.png"


# --- Footer social media links --- #

# Select the social network links that you want to show in the footer.
# Uncomment the links you want to show and add your information to each one.
social-network-links:
  email: "info@tu-pro.ch"
#  facebook: yourname
  github: ETH-NEXUS
  twitter: NEXUS_PHT
#  patreon: yourname
#  youtube: yourname
#  reddit: yourname
#  linkedin: yourname
#  xing: yourname
#  stackoverflow: "yourhandle"
#  snapchat: yourname
#  instagram: yourname
#  spotify: yourname
#  telephone: +4162441234567
#  steam: yourname
#  twitch: yourname
#  yelp: yourname
#  telegram: yourname
#  calendly: yourname
#  mastodon: instance.url/@username
#  ORCID: your ORCID ID
#  google-scholar: your google scholar

# If you want to show a link to an RSS in the footer, add the site description here.
# If you don't want to show an RSS link, remove the following line.
# rss-description: This website is a virtual proof that I'm awesome

# --- General options --- #

# Select which social network share links to show in posts
share-links-active:
  twitter: true
  facebook: true
  linkedin: true
  vk: false

# How to display the link to your website in the footer
# Remove this if you don't want a link in the footer
url-pretty: "tu-pro.ch"

# Excerpt word length - Truncate the excerpt of each post on the feed page to the specified number of words
excerpt_length: 50

# Whether or not to show an excerpt for every blog post in the feed page
feed_show_excerpt: true

# Whether or not to show a list of tags below each post preview in the feed page
feed_show_tags: true

# The keywords to associate with your website, for SEO purposes
#keywords: "my,list,of,keywords"

# --- Colours / background image --- #

# Personalize the colours in your website. Colour values can be any valid CSS colour

navbar-col: "#424242"
navbar-text-col: "#FFFFFF"
navbar-border-col: "#DDDDDD"
page-col: "#FFFFFF"
text-col: "#404040"
link-col: "#008AFF"
hover-col: "#0085A1"
footer-col: "#EAEAEA"
footer-text-col: "#777777"
footer-link-col: "#404040"

# Alternatively, the navbar, footer, and page background can be set to an image
# instead of colour

#navbar-img: "/assets/img/bgimage.png"
#footer-img: "/assets/img/bgimage.png"
#page-img: "/assets/img/bgimage.png"

# Suggest a colour for mobile browsers to use as the browser's theme. This is only supported by a few mobile browsers.
#mobile-theme-col: "#0085A1"

# For any extra visual customization, you can include additional CSS files in every page on your site. List any custom CSS files here
site-css:
  - "/assets/css/tupro-styles.css"

# If you have common JavaScript files that should be included in every page, list them here
#site-js:
#  - "/assets/js/custom-script.js"

# --- Web Analytics Section --- #

# Fill in your Google Analytics gtag.js ID to track your website using gtag
#gtag: ""

# Fill in your Google Analytics ID to track your website using Google Analytics
#google_analytics: ""

# Google Tag Manager ID
#gtm: ""

# --- Misc --- #

# Ruby Date Format to show dates of posts
date_format: "%B %-d, %Y"

# --- You don't need to touch anything below here (but you can if you want) --- #

# Output options (more information on Jekyll's site)
timezone: "Europe/Zurich"
markdown: kramdown
highlighter: rouge
permalink: /:year-:month-:day-:title/
paginate: 5

kramdown:
  input: GFM

# Default YAML values (more information on Jekyll's site)
defaults:
  -
    scope:
      path: ""
      type: "posts"
    values:
      layout: "post"
      comments: true  # add comments to all blog posts
      social-share: true # add social media sharing buttons to all blog posts
  -
    scope:
      path: "" # any file that's not a post will be a "page" layout by default
    values:
      layout: "page"

# Exclude these files from production site
exclude:
  - CHANGELOG.md
  - CNAME
  - Gemfile
  - Gemfile.lock
  - LICENSE
  - README.md
  - screenshot.png
  - docs/

plugins:
  - jekyll-paginate
  - jekyll-sitemap

# Beautiful Jekyll / Dean Attali
# 2fc73a3a967e97599c9763d05e564189