From 9f5eef98725bf53c91444e4f4b3fc67b645be97a Mon Sep 17 00:00:00 2001 From: Likhitha Surapaneni <10923198+likhitha-surapaneni@users.noreply.github.com> Date: Wed, 24 Jan 2024 15:35:09 +0000 Subject: [PATCH] Added examples for gnomADg, gnomADe --- examples/population/query.graphql | 5 + examples/population/response.json | 360 +++++++++++++++++++++++++++++- 2 files changed, 364 insertions(+), 1 deletion(-) diff --git a/examples/population/query.graphql b/examples/population/query.graphql index 96093b9..8227a3f 100644 --- a/examples/population/query.graphql +++ b/examples/population/query.graphql @@ -4,6 +4,10 @@ query pop_example { name description + is_global + super_population { + name + } sub_populations { name @@ -11,3 +15,4 @@ query pop_example { } } + diff --git a/examples/population/response.json b/examples/population/response.json index edb5243..62502ee 100644 --- a/examples/population/response.json +++ b/examples/population/response.json @@ -4,6 +4,8 @@ { "name": "1000GENOMES:phase_3:ALL", "description": "All phase 3 individuals", + "is_global": true, + "super_population": null, "sub_populations": [ { "name": "1000GENOMES:phase_3:AFR" @@ -25,6 +27,10 @@ { "name": "1000GENOMES:phase_3:AFR", "description": "African", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:ALL" + }, "sub_populations": [ { "name": "1000GENOMES:phase_3:ACB" @@ -49,6 +55,10 @@ { "name": "1000GENOMES:phase_3:AMR", "description": "American", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:ALL" + }, "sub_populations": [ { "name": "1000GENOMES:phase_3:CLM" @@ -67,6 +77,10 @@ { "name": "1000GENOMES:phase_3:EAS", "description": "East Asian", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:ALL" + }, "sub_populations": [ { "name": "1000GENOMES:phase_3:CDX" @@ -88,6 +102,10 @@ { "name": "1000GENOMES:phase_3:EUR", "description": "European", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:ALL" + }, "sub_populations": [ { "name": "1000GENOMES:phase_3:CEU" @@ -109,6 +127,10 @@ { "name": "1000GENOMES:phase_3:SAS", "description": "South Asian", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:ALL" + }, "sub_populations": [ { "name": "1000GENOMES:phase_3:BEB" @@ -130,131 +152,467 @@ { "name": "1000GENOMES:phase_3:ACB", "description": "African Caribbean in Barbados", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AFR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:ASW", "description": "African Ancestry in Southwest US", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AFR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:ESN", "description": "Esan in Nigeria", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AFR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:GWD", "description": "Gambian in Western Division, The Gambia", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AFR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:LWK", "description": "Luhya in Webuye, Kenya", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AFR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:MSL", "description": "Mende in Sierra Leone", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AFR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:CLM", "description": "Colombian in Medellin, Colombia", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AMR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:MXL", "description": "Colombian in Medellin, Colombia", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AMR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:PEL", "description": "Peruvian in Lima, Peru", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AMR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:PUR", "description": "Puerto Rican in Puerto Rico", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:AMR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:CDX", "description": "Chinese Dai in Xishuangbanna, China", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:CHB", "description": "Han Chinese in Bejing, China", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:CHS", "description": "Southern Han Chinese, China", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:JPT", "description": "Japanese in Tokyo, Japan", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:KHV", "description": "Kinh in Ho Chi Minh City, Vietnam", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:CEU", "description": " Utah residents with Northern and Western European ancestry", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EUR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:FIN", "description": "Finnish in Finland", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EUR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:GBR", "description": "British in England and Scotland", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EUR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:IBS", "description": "Iberian populations in Spain", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EUR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:TSI", "description": "Toscani in Italy", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:EUR" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:BEB", "description": "Bengali in Bangladesh", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:SAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:GIH", "description": "Gujarati Indian in Houston, TX", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:SAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:ITU", "description": "Indian Telugu in the UK", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:SAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:PJL", "description": "Punjabi in Lahore, Pakistan", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:SAS" + }, "sub_populations": [] }, { "name": "1000GENOMES:phase_3:STU", "description": "Sri Lankan Tamil in the UK", + "is_global": true, + "super_population": { + "name": "1000GENOMES:phase_3:SAS" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:ALL", + "description": "All gnomAD genomes individuals", + "is_global": true, + "super_population": { + "name": null + }, + "sub_populations": [ + { + "name": "gnomADg:afr" + }, + { + "name": "gnomADg:ami" + }, + { + "name": "gnomADg:amr" + }, + { + "name": "gnomADg:asj" + }, + { + "name": "gnomADg:eas" + }, + { + "name": "gnomADg:fin" + }, + { + "name": "gnomADg:mid" + }, + { + "name": "gnomADg:nfe" + }, + { + "name": "gnomADg:oth" + }, + { + "name": "gnomADg:sas" + } + ] + }, + { + "name": "gnomADg:afr", + "description": "African/African American", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:ami", + "description": "Amish", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:amr", + "description": "Latino", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:asj", + "description": "Ashkenazi Jewish", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:eas", + "description": "East Asian", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:fin", + "description": "Finnish", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:mid", + "description": "Middle Eastern", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:nfe", + "description": "Non-Finnish European", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:oth", + "description": "Other", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADg:sas", + "description": "South Asian", + "is_global": true, + "super_population": { + "name": "gnomADg:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:ALL", + "description": "All gnomAD exomes individuals", + "is_global": true, + "super_population": { + "name": null + }, + "sub_populations": [ + { + "name": "gnomADe:afr" + }, + { + "name": "gnomADe:amr" + }, + { + "name": "gnomADe:asj" + }, + { + "name": "gnomADe:eas" + }, + { + "name": "gnomADg:fin" + }, + { + "name": "gnomADe:nfe" + }, + { + "name": "gnomADe:oth" + }, + { + "name": "gnomADe:sas" + } + ] + }, + { + "name": "gnomADe:afr", + "description": "African/African American", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:amr", + "description": "Latino", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:asj", + "description": "Ashkenazi Jewish", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:eas", + "description": "East Asian", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:fin", + "description": "Finnish", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:nfe", + "description": "Non-Finnish European", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:oth", + "description": "Other", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, + "sub_populations": [] + }, + { + "name": "gnomADe:sas", + "description": "South Asian", + "is_global": true, + "super_population": { + "name": "gnomADe:ALL" + }, "sub_populations": [] } ] }, "extensions": { - "execution_time_in_seconds": 0.03 + "execution_time_in_seconds": 0.04 } }