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Supporting population allele frequencies #29

Merged
merged 31 commits into from
Jan 31, 2024
Merged

Supporting population allele frequencies #29

merged 31 commits into from
Jan 31, 2024

Commits on Dec 15, 2023

  1. Parsing populations from VCF

    @likhitha-surapaneni
    likhitha-surapaneni committed Dec 15, 2023
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Commits on Jan 17, 2024

  1. Logic to compute ref allele frequency, maf, hpmaf

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 17, 2024
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Commits on Jan 23, 2024

  1. Added endpoint to return population object

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 23, 2024
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  2. Adding Population schema

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 23, 2024
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Commits on Jan 24, 2024

  1. Fixed a bug in population frequencies

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  2. Making allele_frequency nullable

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  3. Reverting nullable allele_frequency for now

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  4. Reverting nullable allele_frequency for now

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  5. Added population metadata for gnomadg and gnomade

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  6. Added population metadata for gnomadg and gnomade

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  7. Added examples for population and population_allele_frequencies

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  8. Renamed file

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  9. Minor typo

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  10. Added examples for gnomADg, gnomADe

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  11. Cleanup of files

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  12. Added version metadata for gnomADg and gnomADe

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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  13. Allele_frequency as nullable

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 24, 2024
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Commits on Jan 25, 2024

  1. Not returning population_allele_frequencies with allele_frequency null

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 25, 2024
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  2. Removed updates to example payload

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 25, 2024
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  3. Removed updates to example payload

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 25, 2024
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  4. Modified endpoint from population to populations; Updated examples

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 25, 2024
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  5. Merge branch 'main' into population_scores

    @likhitha-surapaneni
    likhitha-surapaneni authored Jan 25, 2024
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Commits on Jan 29, 2024

  1. Fixing is_global values

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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  2. Merge branch 'population_scores' of https://github.com/likhitha-surap… 

    …aneni/ensembl-hypsipyle into population_scores
    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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  3. Fixing the nullability logic in super_population

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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  4. Fixing the nullability logic in super_population

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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  5. Fixed typo in population metadata file and removed the redundant work… 

    …around
    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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  6. Fixed typo in population metadata file and removed the redundant work… 

    …around
    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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  7. Updated population.graphql to conform with VDM

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 29, 2024
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Commits on Jan 30, 2024

  1. Handling multiple maf and hpmaf alleles

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 30, 2024
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  2. Added display_group_name

    @likhitha-surapaneni
    likhitha-surapaneni committed Jan 30, 2024
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